Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00144 ATGGGGAACGAAGAAGAAGAGGAATTGGTGGCTGAAGTTGAAGCAGTGGAAGCCGTGTATGGAACCGATTGCACCGTTCTCAGTTCATTTCCTCCCCATTTTCACCTCTTTCTCAAACCCAGAACTGCTGATGTTTCCTCCCAACAGTTTGTGGAAGCCGTTCTCGAGATACGAGCTACCTTACAGTATCCAAAAGAACCACCTTCTATTGAGCTTGTGGATTGCAAGGGTCTGGATGAACAGAGACAGAAACATCTATTAAATTACATACAAAGTAAAGCCTGTGAGATCTCCCCTTGTTTAATGCTTGTAGCTCTTTGTGAGGAAGCTGTTGAGAAACTGTCAGCTATGAATCATCCTGATGGTGATTGTCCATTGTGTTTATTCCCTTTGGTCCCAGAAGATCAGCAAAGCGAAACTTTGCCTTTTATGAAGTTAATGTCTTGTTTTCACTGCTTCCACAGTGAATGTATCATTAGATGGTGGAAATGGCTTCAAAGTTCTAAAGAACCAGACTCTGCCAATACAGACAGTGTAGCTGCACATCGGAACCATGACAATCATAAGAAAATGGAAGAGAGTGTGGGAAATTGTCCCGTCTGTCGCAAACCTTTTCTTGCCAAGGATTTGGACCATGTGCTTGCCCTAGTTGGATCATACTCTTCCCAATTGACTTCAGACAATGAAGAACTCAACGATGAAGATACGCTCCTTCAATCAGAGAATGAGATCATTAGGAGACATAAATTTAAAGCCATCCTAAATTTACAGAAGGAGAACAGTGGCTTGATTGAACCCAAAAAAGATATAGTCATATTAACTGGTATGTATCTTCCACAACCAGTTGCAATGCCGAGCTCCACATCAACCAAGGAATCTGATGAGCAGACACAAAATGAACCACCTGCAGTTGTGTCAGCAAAACACGTCGGTGGGACGTCAAATGGACCCAGTTCTAGCAGGCAGAGGAATTTCGGTCCAAGGAGGCAGAAAGCAAGAAGTGATATAAATCCAAGAAAACCAGTTCAACAGTGGGTAAGAAGAGATACTCCCAGCAATAAGCAATAG 1068 0.4279 MGNEEEEELVAEVEAVEAVYGTDCTVLSSFPPHFHLFLKPRTADVSSQQFVEAVLEIRATLQYPKEPPSIELVDCKGLDEQRQKHLLNYIQSKACEISPCLMLVALCEEAVEKLSAMNHPDGDCPLCLFPLVPEDQQSETLPFMKLMSCFHCFHSECIIRWWKWLQSSKEPDSANTDSVAAHRNHDNHKKMEESVGNCPVCRKPFLAKDLDHVLALVGSYSSQLTSDNEELNDEDTLLQSENEIIRRHKFKAILNLQKENSGLIEPKKDIVILTGMYLPQPVAMPSSTSTKESDEQTQNEPPAVVSAKHVGGTSNGPSSSRQRNFGPRRQKARSDMXNPRKPVQQWVRRDTPSNKQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00144 356 MobiDBLite consensus disorder prediction 311 325 - -
Viun10g00144 356 SUPERFAMILY UBC-like 5 114 IPR016135 -
Viun10g00144 356 SUPERFAMILY RING/U-box 116 208 - -
Viun10g00144 356 Gene3D Ubiquitin Conjugating Enzyme 2 119 IPR016135 -
Viun10g00144 356 SMART ring_2 124 201 IPR001841 -
Viun10g00144 356 Pfam RWD domain 8 113 IPR006575 GO:0005515
Viun10g00144 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 216 IPR013083 -
Viun10g00144 356 ProSiteProfiles Zinc finger RING-type profile. 124 202 IPR001841 -
Viun10g00144 356 MobiDBLite consensus disorder prediction 281 303 - -
Viun10g00144 356 FunFam RWD domain-containing protein 120 217 - -
Viun10g00144 356 SMART RWD2001b 11 117 IPR006575 GO:0005515
Viun10g00144 356 ProSiteProfiles RWD domain profile. 11 117 IPR006575 GO:0005515
Viun10g00144 356 MobiDBLite consensus disorder prediction 280 356 - -
Viun10g00144 356 PANTHER RING FINGER PROTEIN 25 3 334 IPR039133 GO:0061630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00144 K10640 - gmx:100791789 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00144 10 905113 911933 Viun10g00144 10 905113 911933 ECH