Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00064 ATGTTCCTTTCACTCACATATTCCTTCACGTTCTTCTTCATTCTCATTCTCATTCTCACATCATCATCACTTTCATCACACGTTGCAACGTTCACACCACCACCCACCAAAATATCCATCACAAGCCACAACATTCAAAGCCTCAACAATGCAGACAAAGGGACTAAAATCGCAGGTATATCGCAGTTTAAACGATACCTACATCGTTTTGGGTACCTACGAAACAACAACAACGACAGTTTCAGTTTCAACGATGAATATGATGTCGTGTTGGAATCTGCTCTCGTTAGATACCAAGGAAACCTTGGTCTCCAAGTAACCGGGAAGCTCGACTCCGACACGGTTGCTCAAATGATCACACCAAGATGCGGCGATCCAGACACAAACACAAGACCCCACAATCACGATCACAATCACAATCACAATCACGTTCATTCTTCAAAGAACTTCGTGTTTTTTCCGGGAAAACCACGTTGGTCGCGTTCAATGCCGATGACACTCACCTACGCCTTCTCACGTGAGAACATGATCCGTGGTGGTTTGAGCATGAAAGAGATAAGAGAGGCATTCCAACGTGCATTCTCGAGATGGGCTTCGGTGATTCCTGTTAGTTTCGTTGAGGTGAGTGACTCTGAGGTTTCGGACTTGAAAATAGGGTTTTACAAGGGGGAGCATGGTGATGGTGAGCCCTTTGATGGGGTGCTTGGGGTGTTGGCACACTCCTTTTCACCAGAGATCGGCCGGCTCCACCTTGACGCGGCAGAGACGTGGGCGGTGGACTTTGAGGCCACCGTGTCGGAGGTGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGTTAGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTGATGTATCCGAGTTTGAGGCCAAGAGATAAGAGGGCTGATCTGAACATTGATGACATAAAGGGGGTGCAGTCTCTGTATGGATCAAACCCTAATTTCAGATCAGAGTGGTCACTGGAATCTGATATGTCGGCAAATAAAGGTTCCAACTTTGTGAAACCTTTGAAGTTGGCTTCTGGTCTCATAATCATAATTTCTCTCATGCATAGTTTATGTACATTATAG 1107 0.4652 MFLSLTYSFTFFFILILILTSSSLSSHVATFTPPPTKISITSHNIQSLNNADKGTKIAGISQFKRYLHRFGYLRNNNNDSFSFNDEYDVVLESALVRYQGNLGLQVTGKLDSDTVAQMITPRCGDPDTNTRPHNHDHNHNHNHVHSSKNFVFFPGKPRWSRSMPMTLTYAFSRENMIRGGLSMKEIREAFQRAFSRWASVIPVSFVEVSDSEVSDLKIGFYKGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEATVSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANKGSNFVKPLKLASGLIIIISLMHSLCTL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00064 368 FunFam Metalloendoproteinase 1 50 327 - -
Viun10g00064 368 Pfam Matrixin 159 322 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Viun10g00064 368 PRINTS Matrixin signature 309 322 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun10g00064 368 PRINTS Matrixin signature 190 205 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun10g00064 368 PRINTS Matrixin signature 275 300 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun10g00064 368 PRINTS Matrixin signature 214 242 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun10g00064 368 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun10g00064 368 SMART col_5 155 323 IPR006026 GO:0006508|GO:0008237|GO:0008270
Viun10g00064 368 Gene3D Collagenase (Catalytic Domain) 51 327 IPR024079 GO:0008237
Viun10g00064 368 PANTHER MATRIX METALLOPROTEINASE 44 325 - -
Viun10g00064 368 Pfam Putative peptidoglycan binding domain 59 118 IPR002477 -
Viun10g00064 368 SUPERFAMILY PGBD-like 53 128 IPR036365 -
Viun10g00064 368 CDD ZnMc_MMP 158 322 IPR033739 GO:0008237|GO:0008270
Viun10g00064 368 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 151 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00064 Viun-Chr10 378552 380021 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00064 - K07999 gmx:100781237 546.584