Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00061 ATGGGGAAAATCCCTCCGTCGTTTCGCTCTGCAATAGGAAACCCTAACATTCGAAACCCTTCTTCTCTGTTCCGCCCTCAACCACCTTCTCCTCCCTCCAAACCACTCCCCTCCACCAAGAAAAAATCCCCAAAACCCATTCCACAACCAAACCCTATCTTCAAATCCCCAAATCTCGAAGATGCCAAGAAAATCTTCAACTCCATCGCCAATTCCTCCAAAGACCCTCGCTTTCCGAATTCCCTCCTCCACTCCTACGCCAAAGTCGCCACCTCAACCTCCGACTCTGTCAAATTCCTCCACCACATCACTAAAACCCTCCCTTCCTTCTCCCCCGATCGTTCCACCTTCCACATTCTCCTTTCCCACTCCTTGCCCAACCCCAATTCCAATCCCAATTCCGATTCCGATTCCGCTCTCTCCGCAATCCACCAAACCCTAAATGCAATGCACGCCGCCGGGGTCACTCCGGATGTCGCCACAGCCGATGTTGCTGTCCGCGCCTTGTGCTCCGCCGGCCACCTTGACCACGCCGTTCACTTGATCAAAGAATTCGCCTCCAAGCACTGCCTTCCGGATACCTACACCTTCAATTTCGTTGTCAAGCACCTCTGCAAAGCCCGCGCCTTGTCCACTGTCTACGCCTTCATCGACGAAATGCGCGAAAAATTCGGTGTGAAGCCTGATCTTGTCACCTACACTATCTTGATTGACAATGTGTGTAATGGTAAGAACCTGAGAGAGGCGATGAGGTTGGTGAGTGTGCTTCATGAGGAAGGGTTCAAGCCTGATTGCTTTGTGTATAACACGATTATGAAAGGGTATTGTGTGTTGAGCAGAGGGAGTGAGGCGATTGAGGTTTATAACAAGATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTTACTTACAACACTTTGATTTTTGGGTTGTCCAAGTCGGGGAGGGTGGTGGAGGCCAAGAAGCTGCTGCGTGTGATGACGGAGAAGGGTTATCTTCCTGATGAGGTGACTTATACTACGCTGATGAATGGGATGTGTAGGAAGGGGGAGGCTCTGGCGGCGCTGGCATTGCTGGGGGAGATGAAGGGGAAGGGGTGCAGCCCCACTGAATGCACATATAACACACTGCTGCATGGGTTGTGCAAGGCGAGGTTGTTGGAGAAGGCGACTGAGTTCTATGGGGTGATCAAGGAAGGTGGTTTGAAGCTTGATAATGCCTCCTATGGGACATTTGTGAGGGCACTCTGTAGGGATGGTAGAGTTGCCGAGGCTTATGAGGTGTTTGATTATGCTGTTGAGAGCAAGAGCTTGACTGATGTTGCTGCTTACTCGACGTTGGAGAGCACGCTTAAGTGGCTCAAGAAGGCCAAAGAACAAGGGCTTGCTGTTTAA 1392 0.5122 MGKIPPSFRSAIGNPNIRNPSSLFRPQPPSPPSKPLPSTKKKSPKPIPQPNPIFKSPNLEDAKKIFNSIANSSKDPRFPNSLLHSYAKVATSTSDSVKFLHHITKTLPSFSPDRSTFHILLSHSLPNPNSNPNSDSDSALSAIHQTLNAMHAAGVTPDVATADVAVRALCSAGHLDHAVHLIKEFASKHCLPDTYTFNFVVKHLCKARALSTVYAFIDEMREKFGVKPDLVTYTILIDNVCNGKNLREAMRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVVEAKKLLRVMTEKGYLPDEVTYTTLMNGMCRKGEALAALALLGEMKGKGCSPTECTYNTLLHGLCKARLLEKATEFYGVIKEGGLKLDNASYGTFVRALCRDGRVAEAYEVFDYAVESKSLTDVAAYSTLESTLKWLKKAKEQGLAV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00061 463 NCBIfam pentatricopeptide repeat 336 370 IPR002885 -
Viun10g00061 463 NCBIfam pentatricopeptide repeat 371 404 IPR002885 -
Viun10g00061 463 NCBIfam pentatricopeptide repeat 301 335 IPR002885 -
Viun10g00061 463 NCBIfam pentatricopeptide repeat 267 299 IPR002885 -
Viun10g00061 463 NCBIfam pentatricopeptide repeat 231 265 IPR002885 -
Viun10g00061 463 NCBIfam pentatricopeptide repeat 407 435 IPR002885 -
Viun10g00061 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Viun10g00061 463 Pfam PPR repeat family 263 312 IPR002885 -
Viun10g00061 463 Pfam PPR repeat family 192 242 IPR002885 -
Viun10g00061 463 Pfam PPR repeat family 333 382 IPR002885 -
Viun10g00061 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Viun10g00061 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Viun10g00061 463 MobiDBLite consensus disorder prediction 22 53 - -
Viun10g00061 463 Gene3D Tetratricopeptide repeat domain 318 462 IPR011990 GO:0005515
Viun10g00061 463 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 57 251 - -
Viun10g00061 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Viun10g00061 463 Gene3D Tetratricopeptide repeat domain 53 208 IPR011990 GO:0005515
Viun10g00061 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Viun10g00061 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Viun10g00061 463 Gene3D Tetratricopeptide repeat domain 209 312 IPR011990 GO:0005515
Viun10g00061 463 MobiDBLite consensus disorder prediction 1 57 - -
Viun10g00061 463 Pfam PPR repeat 400 430 IPR002885 -
Viun10g00061 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00061 246 460 Glycosyltransferase AT1G05670 31.507 5.27e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00061 - - gmx:100782321 696.427