Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3644g00016 ATGGATGGGAGAGAGGTTATGTCATTTTCTGGTGGCTCACCTTCATATTACATGCATAGAGGAGGGGTTGGAGGGTCTGGTTCTGGAAATCTTAGTGGGGGAGGGGAGTTCCAAGCTGCCCCTGGGTTCAGACCTTTGTCAAACCCTGCCATTCAAGCTGAGCCAAATTCAAGGGGTCAGGGAGGTGGTTCTGTAGGGTCTAGCTCCATATTTTCTGTGGAGCCTCCTCACGGTCGTGCCAATTTTAACCATGACATCGGCATTGGCAGTGGGGCACCTTCAAGTGAGCCTGTTAAGAAGAAAAGAGGGAGACCCCGTAAATATGGTCCTGATGGAACAGTTTCTTTGAGATTGTCTCCAATGTCTGCCCCCGCTAACTCCACCCAGGGTGGAAGTGCAACCACCCTTTCTCAGAAAAAGGGAAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAATTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGCTTGGCCTTTTCACCTCATGTTGTCACTATAGGAGTTGGGGAGGACATTGTGGCCAAGTTATTATTGTTATCTCAACAGAGACCAAGGGCTCTTTGTGTTTTGTCAGGCACTGGAACAGTTTCTTCAGTCACTCTACGACAGCCTGCTTCTACCAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCAGTGCAGAATTACAAAAAAAATGGTTTTTGCAATCAGAATTACAAAAATATGGGCACTGGGGTGGGCAAATCTCACTGTACTGCATATCTGTGA 918 0.4739 MDGREVMSFSGGSPSYYMHRGGVGGSGSGNLSGGGEFQAAPGFRPLSNPAIQAEPNSRGQGGGSVGSSSIFSVEPPHGRANFNHDIGIGSGAPSSEPVKKKRGRPRKYGPDGTVSLRLSPMSAPANSTQGGSATTLSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLLLSQQRPRALCVLSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQNYKKNGFCNQNYKNMGTGVGKSHCTAYL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3644g00016 305 Gene3D - 171 279 - -
Vium3644g00016 305 MobiDBLite consensus disorder prediction 119 141 - -
Vium3644g00016 305 ProSiteProfiles PPC domain profile profile. 163 305 IPR005175 -
Vium3644g00016 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 277 IPR005175 -
Vium3644g00016 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 268 - -
Vium3644g00016 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 277 IPR039605 GO:0003680
Vium3644g00016 305 MobiDBLite consensus disorder prediction 50 71 - -
Vium3644g00016 305 MobiDBLite consensus disorder prediction 1 153 - -
Vium3644g00016 305 CDD DUF296 171 277 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3644g00016 Vium-Chr3644 103280 106907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3644g00016 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 53.401 5.13e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3644g00016 - - gmx:100798706 411.764