Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01845 ATGTTTAGGGCAGTTAAGTCCCTTGAAGGTTTGTTGCTGTTTAGGGTGGTTAAGTCCCTTGAAGGTTTGTTGCTGTTTAGGGTGGTTAAGTCCCTACAGCCGCTGCAGGGTAGTGTAGTCCCTGCAGGACAGATGTTTCCTGAAGGCTTGTCGTTGTTTAGGGCAGTTAAGTCCTTTGAAGTTTTGTTGCTGTTTGCCACTATTGATGGCAATCCAATCCCTGCAGCCCTTCATCTGTTCTTGCAGTTTGTTGTTGTTTGCTGCTGCAAGTCATCATCCATTTTTGATGGAAATCTCTCTCGTCCATTACTGTCCAAGTTGAAGTTTCATGGTGCAAGTTCGCCCTCATCCATTGCTGTCCAAGTTGAATTGAAGTTTCATTGTGCTAGTTCGCCTTCGTCCGTTGCAATCCAAGTTGGTTTATTGACGCTCGCTACAATTGAGAAGAAATTGAAAACCCTGGAACCGAAAACTTTCGTGAATATTAAAGCGGGGGATGGGATGACTATGGGGTGGACTTTGGGAAAGGAAGAAATTGAAAACCCTAGACAGCAGCAAAGAGAAGAAGTAAAACCACATGTGAGCCTTGTGGTGGTGGCAATGGCGGAGCACTTGCCATCGATGTTCGGGACGGGGACGGTCATGGTGAATTGCCATTCTACTTCAAGAGAGGCACATTGCTCCGACATGATAACCCCCGGCGGCAATGCTCACGGCAACCCCCTCGACCACCGCCAGATCCAGGACCACTTTGAGGAGTTCTATGAGGATATCTTTGAGGAGCTCTCCAAGTACGGCGAAATCGAAAGCCTCAAGGTTTGCGACAACCTCGCCGACCACATGGCGGGCAATGTTTACGTTAAGTTCAGCGAGGAGGAGCATGTTACAAATGTTGTCAGGAACCTCGCGGGACGATTTTATGCCGGTAGGCCAGTGATCGTGGACTTCTCGTTGGTGACGGTTTTTCAAGGAGTTACTTGCAGGCAGTACGAGGAGAATATTTGCAATCGCCATGGCTGCAACTTCATGCATTTGAAAAGAATTAGTTGGGATTTGAGACATCAATTATTTGGGAAGCATCATAGAAGGATCAGCAATAGCAAGAGTCGTTACGGGCATCGCAGCCATGACGAGCAGTCCTATCGTAATCATAGTAGAAAACGCAAGAGTTCGAGTCCTGAACTTAGAGGAAGAAGTGGAAGTTCGAGACGGAAGAAGGGAAGGAAGGAAGCAACATGGGTGGATGTACTGACTATTAAGGCACAATTCCAAACTTCAACCTTGAGGACAAGGTTGCGCATTAGGTGGTGGGATCACGTTTATCATGTGGAGAGAGAATTTGGTTCTCTTGGAGGTTGTTACAACTGTGCAGTGGCGATACTGAATACAGAATATACACTAATAGGAGTTTCTGTGCCTGGTCTTGAGGCTGAATTTCAACCAGTTGTTAATTATTTATTACCTCATATTTTATCTCACAAACAGGATCCTCATGATATTCATCTCCAGTTGTTGCAAGATGTGACAAGTCGGTTGCTTGTATTTCTTCCACAATTAGAGACAGACCTTTCCAGCTTTCCAGATAATCCTGAATCTAACCTACGATTTCTTGCCATGCTTGCTGTCGGAGTAGCATCAGTTGAGGGGAATGCAAAGACTTGCTTTGAAGTGGTTTGGTTGCACAAGAAGACATCCCATAAAGGCCATTAA 1710 0.4579 MFRAVKSLEGLLLFRVVKSLEGLLLFRVVKSLQPLQGSVVPAGQMFPEGLSLFRAVKSFEVLLLFATIDGNPIPAALHLFLQFVVVCCCKSSSIFDGNLSRPLLSKLKFHGASSPSSIAVQVELKFHCASSPSSVAIQVGLLTLATIEKKLKTLEPKTFVNIKAGDGMTMGWTLGKEEIENPRQQQREEVKPHVSLVVVAMAEHLPSMFGTGTVMVNCHSTSREAHCSDMITPGGNAHGNPLDHRQIQDHFEEFYEDIFEELSKYGEIESLKVCDNLADHMAGNVYVKFSEEEHVTNVVRNLAGRFYAGRPVIVDFSLVTVFQGVTCRQYEENICNRHGCNFMHLKRISWDLRHQLFGKHHRRISNSKSRYGHRSHDEQSYRNHSRKRKSSSPELRGRSGSSRRKKGRKEATWVDVLTIKAQFQTSTLRTRLRIRWWDHVYHVEREFGSLGGCYNCAVAILNTEYTLIGVSVPGLEAEFQPVVNYLLPHILSHKQDPHDIHLQLLQDVTSRLLVFLPQLETDLSSFPDNPESNLRFLAMLAVGVASVEGNAKTCFEVVWLHKKTSHKGH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01845 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 319 IPR000504 GO:0003723
Vimu9g01845 569 FunFam Splicing factor U2AF small subunit 220 318 - -
Vimu9g01845 569 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 229 406 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu9g01845 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 311 IPR000504 GO:0003723
Vimu9g01845 569 Gene3D - 180 317 IPR012677 -
Vimu9g01845 569 PRINTS U2 auxiliary factor small subunit signature 248 263 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu9g01845 569 PRINTS U2 auxiliary factor small subunit signature 337 349 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu9g01845 569 PRINTS U2 auxiliary factor small subunit signature 276 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu9g01845 569 PRINTS U2 auxiliary factor small subunit signature 303 327 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu9g01845 569 MobiDBLite consensus disorder prediction 367 407 - -
Vimu9g01845 569 SUPERFAMILY RNA-binding domain, RBD 250 316 IPR035979 GO:0003676
Vimu9g01845 569 MobiDBLite consensus disorder prediction 370 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01845 Vimu-Chr9 27878367 27882687 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01845 K12836 - gmx:100794975 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01845 9 27878367 27882687 Vimu9g01845 9 27878367 27882687 ECH