Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01807 ATGGCATCAACGTTTCTCACCCTGCCAACTCCTTTCCTACACAAAACCACTGCCATTTCTTTCTCCAACAAGAGGCCCTCATTTTCGCAGAGGAGCTCTCTCAAGATCAATGCAATTGCCAAAAAATGGGAACCCACTAAGGTTGTGCCTCAGGCTGACAGAGTTCTTATTCGTTTGGAAGAGCTATCAGATAAAACAGCTGGGGGAGTTTTGCTGCCCAAATCAGCCGTGAAATTTGAACGATATCTCGTGGGAGAAATCCTAAATGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGGTACTATTCACTGACATGAGTGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCATTGCTTCTGCAAAGCAAGTGACTTGTTGGCTGTGGTTGAGTAG 405 0.4593 MASTFLTLPTPFLHKTTAISFSNKRPSFSQRSSLKINAIAKKWEPTKVVPQADRVLIRLEELSDKTAGGVLLPKSAVKFERYLVGEILNVGAEAGELKAGTKVLFTDMSAYEVDLGTDAKHCFCKASDLLAVVE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01807 134 FunFam 10 kDa chaperonin 43 134 - -
Vimu9g01807 134 CDD cpn10 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu9g01807 134 PANTHER 10 KDA HEAT SHOCK PROTEIN 46 132 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu9g01807 134 Pfam Chaperonin 10 Kd subunit 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu9g01807 134 Gene3D GroES chaperonin 43 134 IPR037124 GO:0006457
Vimu9g01807 134 SMART Cpn10_2 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu9g01807 134 SUPERFAMILY GroES-like 47 134 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01807 Vimu-Chr9 27311693 27315367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01807 15 134 Calmodulin-binding Proteins AT5G20720 26.515 2.12e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01807 K04078 - gmx:100306026 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01807 9 27311693 27315367 Vimu9g01807 9 27311693 27315367 ECH