Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01661 ATGTCGAAGGTTGAAAGCAGCATGGCTCGGGTGGTTCTGGAGCCACACGCGCAGTTCGACCTCACCGCCCACTCACGCGCCAGTTCTATTCGATCGCTCGCACTTGCGACACTGCCGGATGCGAGACGGGACCATTCTACTGTCCTTTACGTCGGAACGAACTCTGGAACCCTCTTCTCCCTATCGGTGGACACCGACGACGGTGACGGCGCCCCGAACGATGCCGTTCTGCGGAAGCTCTCGTTTCTGCGGAGCGTTTCGGTGAGCGACGCCGCAGTCGAGTGCATTTCGGTGATCGAGGAGTTCGGGAAGGTTCTGTTGCTCTCCAATGGGGCTTTGTTCTTGGTGGATTCGGAGCTCTCGAATCGCGCTTCGAAATTGAGTTTCTCGAAGGGAGTATCTTTGGTCACGAGAAGGAGGTTTAGGAACGGCGAATCCGAGAGTTTGGGTTTGGGTTTCGGTTCGGGTTCGGGGCTAGGTTCGGGGTTAGGGTTGTTTCAGAAATTGAGAATGAACTCAGTGAAGGAGGGTGAAATGCAGAGTGAGGGTGTTTGTGTTTTTGCGGTTGTTGTTGGGAAGAGGTTGATTCTTGCGGAGCTTGTCTTGGGGAATAGGAATGGGAAAAATGAGAGGGATGATGGTGGTGGTGGCTCTCTTGTGGTTTTGAAGGAGATTCAGTGTATTGATGGGGTTGTTAGTGCCATGGTGTGGCTTAATGATTCTATTGTTGTTGGTACTGTAAATGGGTATAGTTTGATTTCCTGTGTAACTGGGCAGAGCAGTGTGATCTTCTCGCTGCCGGATGTGTCGCGGCCGCCAAGGTTGAAGCTTTTGCACAAGGAGTGGAGGGTGCTGTTGTTGGTGGACAATGTGGGGGTTATTGTTGACGCACATGGGCAGCCGGTGGGAGGGAGTCTGGTGTTTCGGCATGGGTTGGATTCAGTTGGAGAGATCGGTTCTTATGTGGTTGTAGTGAGTGATGGGAAGATTGAGTTGTATCATAAGAGGTATGGTGGGTGTGTTCAGGTTTTGCCGTTTGGTGGGGAAGGAGTTGGGCGATGCGTTGTTGCTAGCGAGGAAGATAGGGATGGGAGGATTGTTGTTGTTGCCACTGCTACCAAGGTAGTGTGCTATCAGAAATTACCTTCTGTAGAACAAATAAAAGACCTTCTGAGGAAGAAGAACTATAAGGGAGCCATATCCTTGGTGGAGGAGCTTGAGTCAGAAGGGGAAATGTCAAAAGATTTGCTGTCGTTTGTTCATGCTCAAGTGGGATTCCTCTTACTTTTTGACTTGCATTTTAAAGAAGCAGTGGACCACTTCTTGCTTTCTGACACGATGCAACCTTCTGAAGTATTCCCATTTATAATGCGTGATCCAAATCGATGGTCCTTACTGGTTCCTAGGAATAGGTATTGGGGTTTGCATCCTCCACCAGCCCCCCTTGAAGATGTTATAGATGATGGCTTGATGACAATCCAAAGAGCTTCTTTTCTGAGGAAAGCAGGTGTAGAAACAATAGTAGATAATGATCTATTTCTCAATCCAGTGAATAGAGCTGATTTGTTGAAGTCAGCAATCGAGAACATTAGTAGGTCTGACTTCAATTTTGTTATTATTCACTTATTTGTTTCAGTTTCGGATGTTGATTATATTCCTATTCCTACAAAAAGCTCCTATATCCTGTACCAGGACTTTTGGCAGATCATAAAGGAAAGTTTGCATAGAAGAAGATCGGAATATACTGAATTTGGGTTTCAGTCTCATTTCAAAATTGCACTGTATTTGGAGGCCTGTCGAGAAAAAGACCTAACGGAATCAGTCAGGGAGGGAGTTGACACTCTACTAATGTATCTCTACAGAGCTCTAAATTGTGTTGAGGACATGGAGAGGCTGGCATCTTCTACAAACTGGTGTGTTGTGGAGGAATTGGAGCAGATGTTAGAAGAGTCTGGGCACCTACGGACACTTGCCTTCTTGTGTGCAAGTAAAGGAATGAGCTCAAAAGCTGTGCATATTTGGCGCATCCTAGCAAGAAATTATTCATCTGGCCTGTGGAAAGACCCTGCTTTGGAGAATAGCACGCAGGACAGTGGGGAAAGCCTCATTTCTGGCAGGTCAATTGCTGCAGCTGAAGCATCAAAGATTCTTGAGGAATCTTCTGATCAAGAGTTGATTCTACAGCATCTAGGATGGATTGCTGATATTAGCCAGGTTCTTGCAGTCAAAGTTTTAACTTCAGAGAAACGAGAGATCCATCTTTCTCCTGATGAAGTTGTTACAACCATTGATCCGCAGAAGGTAGAAATTCTACAGAGGTATCTCCAGTGGTTGATTGAAGATCAGGACTGTAATGATACACAGTTGCATACGTTGTATGCCCTCTCACTTGCCAAATCAGCAATTGAAGTCTTTGAATCTGAAAATATATCTAAGAATCTGGATAGTGAAAATACGGAGACAAGAAGTTTGGCTGTGTCCAAGAACTCAATCTTTGACACTCCTGTCAGGGAAAGATTGCAGATTTTTTTGCAATCCTCAGACTTGTATGATCCAGAAGAAGTTCTTTATTTGATTGAAGGATCAGAATTGTGGTTAGAGAAGGTAATTTTGAAACTTTTGACTGTTTTCTTGGGTAATGTTTATCGAATGCTGGCATACATGATGCTAATGGAGACATGCCCCGAAGATGAGGAGGAGTTGGATTCAAAGAGCTATGTACGTCAGTATTGGACGAGTAATTGTAGACTTTTGGGAGGGTGTGGTTATAAGTCCCCTCAGGCTATTCTATATAGAAGACTGGGGCAGGAGACTTTGGTCCTCCAAATTTTGGCTTTGAAACTTGAAGACAGTGAAGCTGCTGAGCAGTATTGTGCTGAGATAGGAAGGGCTGATGCATACATGCAGTTGCTTGAAATGTATTTGGACCCACAAGATGGTAAGGATCCCATGTTTACTGCTGCCGTTCGCCTACTTCATAATCATGGAGAATCATTAGATCCGTTGCAAGTTTTAGAGAAACTATCTCCAGATATGCCACTTCAACTTGCTTCTGATACTTTACTAAGAATGTTCAGGGCCAGAGTTCATCATCATCGTCAAGGACAGGTCTTCTTTCTACGTGATAGAGAAAGAATATTAAACTCCACTCAGGGTGTAGCGGCTTCTAAATTCTTTCAGATTGTGCATAATTTATCTCGTGCTGTGGACATTGATGCAAGATTATCAAGATTGGAGGAGAGGTCAAGGCATGTTCAAATTGATGATGAGAGTCTCTGTGATTCCTGTGATGCACGCCTTGGTACGAAGCTATTTGCAATGTATCCTGATGACACTGTTGTATGTTACAAGTGTTACCGTCGTCAAGGTGAGTCAGTGTCTGTATCAGGCCGCAATTTTAAGGAAGACATCCTATTTAAACCGGAAGCAGCTTCCACTTATACCAATCCAAATTCATTCAAAATCTGGAAAAGGAAATTGGTTGATGTAAAAAGCTTGGAGGATCAGGTTCTGACATTCTAA 3522 0.4466 MSKVESSMARVVLEPHAQFDLTAHSRASSIRSLALATLPDARRDHSTVLYVGTNSGTLFSLSVDTDDGDGAPNDAVLRKLSFLRSVSVSDAAVECISVIEEFGKVLLLSNGALFLVDSELSNRASKLSFSKGVSLVTRRRFRNGESESLGLGFGSGSGLGSGLGLFQKLRMNSVKEGEMQSEGVCVFAVVVGKRLILAELVLGNRNGKNERDDGGGGSLVVLKEIQCIDGVVSAMVWLNDSIVVGTVNGYSLISCVTGQSSVIFSLPDVSRPPRLKLLHKEWRVLLLVDNVGVIVDAHGQPVGGSLVFRHGLDSVGEIGSYVVVVSDGKIELYHKRYGGCVQVLPFGGEGVGRCVVASEEDRDGRIVVVATATKVVCYQKLPSVEQIKDLLRKKNYKGAISLVEELESEGEMSKDLLSFVHAQVGFLLLFDLHFKEAVDHFLLSDTMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVIDDGLMTIQRASFLRKAGVETIVDNDLFLNPVNRADLLKSAIENISRSDFNFVIIHLFVSVSDVDYIPIPTKSSYILYQDFWQIIKESLHRRRSEYTEFGFQSHFKIALYLEACREKDLTESVREGVDTLLMYLYRALNCVEDMERLASSTNWCVVEELEQMLEESGHLRTLAFLCASKGMSSKAVHIWRILARNYSSGLWKDPALENSTQDSGESLISGRSIAAAEASKILEESSDQELILQHLGWIADISQVLAVKVLTSEKREIHLSPDEVVTTIDPQKVEILQRYLQWLIEDQDCNDTQLHTLYALSLAKSAIEVFESENISKNLDSENTETRSLAVSKNSIFDTPVRERLQIFLQSSDLYDPEEVLYLIEGSELWLEKVILKLLTVFLGNVYRMLAYMMLMETCPEDEEELDSKSYVRQYWTSNCRLLGGCGYKSPQAILYRRLGQETLVLQILALKLEDSEAAEQYCAEIGRADAYMQLLEMYLDPQDGKDPMFTAAVRLLHNHGESLDPLQVLEKLSPDMPLQLASDTLLRMFRARVHHHRQGQVFFLRDRERILNSTQGVAASKFFQIVHNLSRAVDIDARLSRLEERSRHVQIDDESLCDSCDARLGTKLFAMYPDDTVVCYKCYRRQGESVSVSGRNFKEDILFKPEAASTYTNPNSFKIWKRKLVDVKSLEDQVLTF 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01661 1173 Pfam CNH domain 48 344 IPR001180 -
Vimu9g01661 1173 SUPERFAMILY WD40 repeat-like 26 383 IPR036322 GO:0005515
Vimu9g01661 1173 PANTHER CNH DOMAIN CONTAINING 1058 1124 IPR032914 GO:0016192
Vimu9g01661 1173 Pfam Vacuolar sorting protein 39 domain 2 989 1120 IPR019453 -
Vimu9g01661 1173 ProSiteProfiles Citron homology (CNH) domain profile. 27 359 IPR001180 -
Vimu9g01661 1173 Pfam Vacuolar sorting protein 39 domain 1 612 686 IPR019452 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01661 Vimu-Chr9 25860678 25873565 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01661 K20177 - cit:102615461 1132.47