Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01642 ATGTTCCTTTCACTCACATATTCGTTCACTTTCTTCTTCACTCTCATCCTCACATCGTCATCACCTTCACACATTGCAACATTCACACCACCAGCCACCAAAATATCCATCACAGGCCACAACATTCAAAGCCTCAACAATGCTGACAAAGGGACTAAAATCGCAGGTATATCGCAGTTTAAACGATATCTACATCGTTTTGGGTACCTAGAAAACAACAACAGTAACATTTTTGACGATGAATTTGATGTCGTGTTGGAATCTGCTCTCGTTAGATACCAAGGAAACCTTGGTCTCCAAGTAACCGGGAAGCTCGACTCCGACACGGTTGCTCAAATGATCACACCAAGATGTGGTGATCCAGACACAAACGCAAGACACCAGAATCATGTCCACAAAGTGCATTCTTCAAAGAACTTCGTGTTTTTCGCCGGAAAACCACGTTGGTCACGTTCAATGCCGATGACACTCACCTATGCCTTCTCACGTGAGAACATGATCCACAGTTTGAGCATGAAAGACATAAGAGAGGCGTTCCGACGTGCATTCCTGAGATGGGCTTCGGTGATTCCTGTTAGCTTTGTTGAGGTGAGTGACTCTGAAGTTTCGGATTTGAAAATAGGGTTTTACAAAGGGGAGCATGGTGACGGTGAACCATTTGATGGGGTGCTTGGGGTGTTGGCCCACTCCTTCTCGCCGGAGATAGGGCGCCTCCACCTTGACGCGGCAGAGACATGGGCGGTGGACTTTGAGGCCACCGTGTCGGAGGTGGCGGTGGACTTGGAGTCAGTGGCCACACATGAGATTGGACACTTGTTAGGATTGTCTCATAGTTCTGTGAAAGAGGCTGTGATGTATCCGAGTTTGAGGCCAAGAGATAAGAGGGCTAATCTGAACATTGATGACATAAAGGGAGTGCAATCTCTGTATGGATCAAACCCTAATTTCAGATCAGAGTGGTCACTAGAATCTGATATGTCGGCAAATAAAGGTTCTAACTTTCTCAAACCTTTGAGGTTGGTTTCTACTTTGATAATTATAATTTCTCTCTTCCATAGTTTATGTACATTGTAA 1074 0.4525 MFLSLTYSFTFFFTLILTSSSPSHIATFTPPATKISITGHNIQSLNNADKGTKIAGISQFKRYLHRFGYLENNNSNIFDDEFDVVLESALVRYQGNLGLQVTGKLDSDTVAQMITPRCGDPDTNARHQNHVHKVHSSKNFVFFAGKPRWSRSMPMTLTYAFSRENMIHSLSMKDIREAFRRAFLRWASVIPVSFVEVSDSEVSDLKIGFYKGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEATVSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRANLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANKGSNFLKPLRLVSTLIIIISLFHSLCTL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01642 357 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 314 - -
Vimu9g01642 357 Pfam Matrixin 149 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vimu9g01642 357 Pfam Putative peptidoglycan binding domain 56 113 IPR002477 -
Vimu9g01642 357 Gene3D Collagenase (Catalytic Domain) 48 316 IPR024079 GO:0008237
Vimu9g01642 357 SMART col_5 145 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vimu9g01642 357 PANTHER MATRIX METALLOPROTEINASE 41 314 - -
Vimu9g01642 357 SUPERFAMILY PGBD-like 59 123 IPR036365 -
Vimu9g01642 357 FunFam Metalloendoproteinase 1 47 316 - -
Vimu9g01642 357 CDD ZnMc_MMP 148 311 IPR033739 GO:0008237|GO:0008270
Vimu9g01642 357 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu9g01642 357 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu9g01642 357 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu9g01642 357 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu9g01642 357 PRINTS Matrixin signature 113 126 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01642 Vimu-Chr9 25623248 25624855 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01642 - K07999 gmx:100781237 563.918