Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01623 ATGGAGCCTTCACTCATACTATCTTCACCTTCATCATCCACCCCTTTACCTTTCTTCATCTCAAACACTCTTCCTTTCCATGCAAAACCCAATCTTTCCGTCAAACTCAATTGCACCCTGCAAAAGTCCCAGTTTTGGGGAAGAAATTTGAGTTGGGTCCCATCACAATCGCCGCATGGAAGACCGAAATTTGATGCGGCGAGGCCCATAATAACAGCGGCCGTGAAGAGAAGGAAAGAGATTCCGTTTGACAACGTGATTCAGAGAGACAAGAAGCTGAAATTCGTTCTGAGGGTGAGGAATATTCTGGTGGCTCAACCAGATAGGGTTATGTCGCTTAAGCAGCTTGGCAAGTTCAAAAGAGATTTGGGGCTCGATAAAAGGAGGAAACTTATTGCCATACTGAAGAAATTCCCAGCAGTGTTTCAGATTATGGAAGAAGGGGTTTACTCTCTGAAATTCAAAATGACCCCTGAAGCTGAGAGACTCTATTTTGAGGAGCTGAAGATTAGGAATGAGTTGGAAGACTTGGTGGTCGTCAAACTCAGGAAGTTGTTGATGATGTCACTGGAAAAACGGATTTTATTGGAGAAAATTGCACATCTCAGGACTGATTTTGGTCTCCCCCTGGGATTTCGTGACACCATTTGTCATAGGTACCCTCAGTACTTCAAAGTGGTTGCAACTGAGCGTGGCCCTGCCTTGGAACTAACTCATTGGGACCCTGAGCTTGCAGTTTCAGCGGCTGAGCTATCGGCTGAGGATAATCGCATCAGGGAAATGGAGGAGCAGAATTTGATCATAGACAGACCTCCCAGGTTCCATAGGGTGAAGCTTCCTAAGGGTCTTAATCTTTCCAAGGGTGAGATGAGGAAGATTATGCAATTCAGAGACTTGCCTTATATTTCGCCTTACTCTGATTTCTCTGCACTGAGGCCAGGGTCAAGGGAGAAGGAGAAGCATGCTTGTGGAGTTGTTCATGAGATTCTGAGTCTCACACTTGAGAAGCGGACGCTTGTTGATCACTTCACACATTTTCGCGAGGAGTTCAGATTCTCTCAGCAGCTGAGGGGGATGTTGATAAGGCATCCTGATATGTTTTATGTCTCTCTGAAAGGAGATAGAGATTCTGTGTTTCTGAGGGAAGCTTACCGGGACTCTCAGTTGGTGGACAAGGATCGGTTGTTGCTTGTAAAGGAAAAGCTTCGTGTCCTGGTTAATGTTCCGCGTTTCCCCAAGGGACCTGCTCGCAAGACCCTTGAAGATAGCTTGAGAGAAGGTGATGGCAGAGAAGATGAAAGTGATCAAGGGGAAGAAGCATGGTCAGAAGAAGTTGATAATTTAGTGAGTGACGAAGGATTCGAGGATTTTGATGATGGTGATGATGGCTGGAGTGATGAAGATGATGACAGTTTGCCACCAGATTTTGGTGACGATGATGAAATAATGGAGATTGGACAAGGAAAGGCAAATAAACAAGTTAAATACACGAGACAGAATGATGAAGAGGCCCTTCTTCCTGTATTCTCCGATGGCCGTCCCAGAGAACAGTGGTGA 1557 0.4554 MEPSLILSSPSSSTPLPFFISNTLPFHAKPNLSVKLNCTLQKSQFWGRNLSWVPSQSPHGRPKFDAARPIITAAVKRRKEIPFDNVIQRDKKLKFVLRVRNILVAQPDRVMSLKQLGKFKRDLGLDKRRKLIAILKKFPAVFQIMEEGVYSLKFKMTPEAERLYFEELKIRNELEDLVVVKLRKLLMMSLEKRILLEKIAHLRTDFGLPLGFRDTICHRYPQYFKVVATERGPALELTHWDPELAVSAAELSAEDNRIREMEEQNLIIDRPPRFHRVKLPKGLNLSKGEMRKIMQFRDLPYISPYSDFSALRPGSREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRVLVNVPRFPKGPARKTLEDSLREGDGREDESDQGEEAWSEEVDNLVSDEGFEDFDDGDDGWSDEDDDSLPPDFGDDDEIMEIGQGKANKQVKYTRQNDEEALLPVFSDGRPREQW 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01623 518 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 69 435 IPR045040 GO:0003723
Vimu9g01623 518 MobiDBLite consensus disorder prediction 416 482 - -
Vimu9g01623 518 MobiDBLite consensus disorder prediction 416 431 - -
Vimu9g01623 518 Pfam Plant organelle RNA recognition domain 80 407 IPR021099 GO:0003723
Vimu9g01623 518 Coils Coil 244 264 - -
Vimu9g01623 518 MobiDBLite consensus disorder prediction 432 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01623 Vimu-Chr9 25447680 25450324 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01623 - - gmx:100810556 833.943