Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01550 ATGCAAAGGCTAATTACTAGGGTTTTGATTCTTTGCTTCATTTCCCAATGTTTATGTGACATTTCTATGGATGAATCCGAAAATACAATTTATGATGTGAGGAACTATGGTGCCAATGGCAATGGAAAATCTGATGATTCTAAGGCTTTTATGGATGCATGGAATGACATATGTGGAAGAGAAGGGACACCAACTCTCTTGATACCACAAAATAGAGTGTTCTTGGTGAAGAGGAACATAATCATGAAAGGTCCATGCAAGGCCACAAATATTAATATTCAGCTTCAAGGAAGAATAGTGGCACCAGAAAAGAATGAATGGCAAGGTGATAAATCTACGATGATTTATTTCACAAACATAAACGGTCTCAGAATTGTCGGAAAAGGAGGATCAATGGATGGTTTTGGTTCCTCTTGGTGGCCATGCAAAAATTGTCCAAGACCATCGGTCATTGGTTTCAATGCATGCAATGATCTTAGTGTTAGTAACCTGATTATCACAAATAGTCCCAAAGCTCACATAACCATAAATGGATGTAAGGGTGCAATATTCTCACATGTTAGCATTCGCTCTCCTGCTGATAGTCCTAACACTGATGGAATTGACATTTCTTCTTCCAAAAATATCTTCATAAAAGATTCCAACATAGCTTCTGGTGATGACTGTATTGCAATCATAGGTGACTCGTCTTACATTAATGCCACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGGGTGGATCAGAATGGAGGAGAAGGAGTCCAAGTGAGTGAGGTGACATTTCGTGGGTTTCGAGGAACATCTGCAGACGACAGAGCTATTGATTTAGCTTGTGGTTCACCAGGTTGCTTCAACATTTTGTTGGATGAAATCAAAATTGTTTCTTCCCAACCAGGAAAACCAGCTTCTTGTTCTTGTACTAATGTTCATGGAACATCCACATCCACTATTCCAAATTGTAATTACTAA 972 0.3909 MQRLITRVLILCFISQCLCDISMDESENTIYDVRNYGANGNGKSDDSKAFMDAWNDICGREGTPTLLIPQNRVFLVKRNIIMKGPCKATNINIQLQGRIVAPEKNEWQGDKSTMIYFTNINGLRIVGKGGSMDGFGSSWWPCKNCPRPSVIGFNACNDLSVSNLIITNSPKAHITINGCKGAIFSHVSIRSPADSPNTDGIDISSSKNIFIKDSNIASGDDCIAIIGDSSYINATGIACGPGHGIRVDQNGGEGVQVSEVTFRGFRGTSADDRAIDLACGSPGCFNILLDEIKIVSSQPGKPASCSCTNVHGTSTSTIPNCNY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01550 323 PANTHER - 252 312 - -
Vimu9g01550 323 SMART pbh1 252 279 IPR006626 -
Vimu9g01550 323 SMART pbh1 206 227 IPR006626 -
Vimu9g01550 323 SMART pbh1 179 205 IPR006626 -
Vimu9g01550 323 Gene3D - 250 322 IPR012334 -
Vimu9g01550 323 Gene3D - 21 249 IPR012334 -
Vimu9g01550 323 Pfam Glycosyl hydrolases family 28 58 248 IPR000743 GO:0004650|GO:0005975
Vimu9g01550 323 Pfam Glycosyl hydrolases family 28 253 312 IPR000743 GO:0004650|GO:0005975
Vimu9g01550 323 SUPERFAMILY Pectin lyase-like 25 318 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01550 Vimu-Chr9 24762207 24766067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01550 1 298 Glycoside Hydrolase AT5G17200 39.355 1.02e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01550 K01184 - gmx:121174629 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01550 9 24762207 24766067 Vimu9g01550 9 24762207 24766067 ECH