Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01549 ATGTTTGGGAGGTCAATAGTTGGAACCCATATAACATTTCATAATGTGGTCAACTATGGTGCTCATGGCGATGGAAAATCTGATGATTCCCATGCCTTTTTAAGTGCATGGAGGGACACATGTCGAACAGAAGGGACACCGATTTTAGTTATACCAAAAAATGGAGTATTCAAGGTGAAGAACATAAACCTGAGTGGTCCTTGCAAGGCCAAAAGTATTCATATTCAGCTTCAAGGTAAAATAGTTGCACCTGAGAGGAATGAATGGGCAAAAGGTCTCCAAGTTGATGATAAGTCCTCTTTAATTTTAATCTCACAAGTCAACAGTCTCACAATTCGTGGAAGTGGACAAATCAATGGCTTTGGTTCTTCTTGGTGGAATTGCCCTTCTTGTCAAAGACCAAAGGTTATTGGTTTTGAACAATGCAATGATCTTAGAGTTAGTCATCTGAGCATAAATGACAGTCCACGAGCTCACGTAACAGTAGATGGTTGTAACAATGCTGTGTTCTCTCATATCAATATTCATGCTCCTGGTGACAGCCCCAACACCGACGGATTTGACATTTCTGCTTCAAAATATATAACTATTCAGGATTCCAATATAGGAACAGGTGATGATTGTATTGCCATTAATGGTGGCTCCTCGTTCATCAATGCTACTAGAATTGCATGCGGACCAGGCCATGGAATAAGTGTTGGTAGCTTGGGAAGAAACAGGGAGCATGATACAGTTGAAGAAGTTTATGTGTGGAATTGCAGCTTCACAAACACCCAAAATGGAGCAAGAATCAAGACATGGAAGGGTGGAGCAGTCAAAGTGAGTGATGTGACATTCAGAGGGTTTGAAGGAACAAGTGGAGATGAGAAAACCATTGACATAGATTGCGACTCGTCTGGTTGTTTCAACATCGTATTGGAAGATATTAACATTGCCTCTTCTGAACCAGGAAAACCAGCTTCCTGTTCTTGCAGTAATGCCCATGCAAGAACTACATCTATCACGCCAAATTGTAATTGCTTATTCAAATGA 1032 0.4079 MFGRSIVGTHITFHNVVNYGAHGDGKSDDSHAFLSAWRDTCRTEGTPILVIPKNGVFKVKNINLSGPCKAKSIHIQLQGKIVAPERNEWAKGLQVDDKSSLILISQVNSLTIRGSGQINGFGSSWWNCPSCQRPKVIGFEQCNDLRVSHLSINDSPRAHVTVDGCNNAVFSHINIHAPGDSPNTDGFDISASKYITIQDSNIGTGDDCIAINGGSSFINATRIACGPGHGISVGSLGRNREHDTVEEVYVWNCSFTNTQNGARIKTWKGGAVKVSDVTFRGFEGTSGDEKTIDIDCDSSGCFNIVLEDINIASSEPGKPASCSCSNAHARTTSITPNCNCLFK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01549 343 PANTHER - 271 328 - -
Vimu9g01549 343 Gene3D - 8 340 IPR012334 -
Vimu9g01549 343 SUPERFAMILY Pectin lyase-like 13 341 IPR011050 -
Vimu9g01549 343 ProSitePatterns Polygalacturonase active site. 222 235 IPR000743 GO:0004650|GO:0005975
Vimu9g01549 343 SMART pbh1 165 191 IPR006626 -
Vimu9g01549 343 SMART pbh1 192 213 IPR006626 -
Vimu9g01549 343 SMART pbh1 269 296 IPR006626 -
Vimu9g01549 343 SMART pbh1 245 266 IPR006626 -
Vimu9g01549 343 Pfam Glycosyl hydrolases family 28 41 279 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01549 Vimu-Chr9 24754860 24758942 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01549 28 342 Glycoside Hydrolase AT4G32380 44.201 6.40e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01549 K01184 - gmx:100782390 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01549 9 24754860 24758942 Vimu9g01549 9 24754860 24758942 ECH