Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01542 ATGCAAAGGCTAATCACTTTTGCGTTGATTTTTGCTTTTGTTTCACCATGTCTATGTGTTGATTATAACGTCATCGATTTTGGTGCCAAGGGAGATGGGAAAACAGATGATTCACAAGCATTTTTAAGAGCATGGCAAAGCACTTGTGGAGCAAAAGAGATGGCAACTCTAGTTATACCTCCAAACTATCAATTCCTTTTGACACCCTTAATTCTAAAGGGTCCTTGCCAAGCCTCAAATATTCACATTCAGATTAAAGGGAAAATAGTTGCACCTGCAAAGAATAAATGGATATCTTATTATTTTTCTTGGATTTTGATAACAAACGTAAATGGTTTGACTGTTGATGGAAGTGAAGGATCAATACATGGTTTGGGTGATACTTGGTGGTCATGCAAATCTTGTCAACGACCATCGGTCATCACTTTCAATGCATGCAATGATCTTAGCGTTAGTTACTTGAATATTGTGGACAGTCCAAGATCTCACATAAACGTCAATGGTGATGATTGTATTGCCATCAGTGGTAACTCCTCTTATGTGAATGTTACTGGGATTGCTTGTGGACCTGGTCATGGAATAAGCTTCACCGGGACAACAAATGGAGCAAGAATCAAGTCATTTCCTAACGGACCAGGTTATGCAAGAGCAATCACTTTTGAGCAAATTACATTGAGAAAAGCTGGCAACCCAATAATTATTGACCAATTCTACTATGCTCCTTTGACGTGGGGAAGAGTCGAAGTGAGTGGAATAACATTTCGTGATTTTAGTGGAACATGTGCATATGATAAAGCTATTACCTTAAATTGTGGTGCACAAGGTTGTTTCAACATTACATTGGATCAAATTAACATTGTCTCTTCTGAAGGAGGAAAGGCTGTTTATTGTTCTGGGAAAAACGTCCATGGAATAGCTACATCTACCAACCCTACCTGTTCTTGCTTATCGTCATGA 957 0.3866 MQRLITFALIFAFVSPCLCVDYNVIDFGAKGDGKTDDSQAFLRAWQSTCGAKEMATLVIPPNYQFLLTPLILKGPCQASNIHIQIKGKIVAPAKNKWISYYFSWILITNVNGLTVDGSEGSIHGLGDTWWSCKSCQRPSVITFNACNDLSVSYLNIVDSPRSHINVNGDDCIAISGNSSYVNVTGIACGPGHGISFTGTTNGARIKSFPNGPGYARAITFEQITLRKAGNPIIIDQFYYAPLTWGRVEVSGITFRDFSGTCAYDKAITLNCGAQGCFNITLDQINIVSSEGGKAVYCSGKNVHGIATSTNPTCSCLSS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01542 318 PANTHER - 195 297 - -
Vimu9g01542 318 Gene3D - 167 316 IPR012334 -
Vimu9g01542 318 Gene3D - 20 166 IPR012334 -
Vimu9g01542 318 Pfam Glycosyl hydrolases family 28 49 167 IPR000743 GO:0004650|GO:0005975
Vimu9g01542 318 Pfam Glycosyl hydrolases family 28 197 301 IPR000743 GO:0004650|GO:0005975
Vimu9g01542 318 SUPERFAMILY Pectin lyase-like 7 316 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01542 Vimu-Chr9 24615849 24620872 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01542 24 313 Glycoside Hydrolase AT5G17200 35.000 1.74e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01542 K01184 - gmx:100801217 393.66