Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01540 ATGGCTTTGCAGTTTCTGAAGCACCCCGTAACCATCTCACGAGGTTTTCACAACGAGACAACGTTCGCTTTTCTTTCTCGGCTTCGAATTCCGAAGCGCCCATTCTCAGTGAGATGGGACAGAGCTCAGATTCCAACTTCTTTCAGGAGCTATGCTACTGTAAAATCAGGAAAGGTTGTACAAGTGAAGAAGAAAAAGCGGCTGGATGAAATATGTCTTGAAAAATATCAGCAATACAGTAGATCTGTCATCCAATCTTGGATTTTGCAAGGCAAAGTATATGTGGACGGGAAGGTGATAAATAAAGCTGGTACCCCTGTACCTGAAAAGGCTGTTGTGGAGATAATAGCAGATGTTCCCAAATATGTATGTAGAGCTGGACATAAGTTGGAAGCTGCCATCGAACAGCTTGGTGTTGATGTTACTGGTAAAGTAGCCCTTGATTCTGGGCTTTCAACTGGAGGATTTACTGACTGCTTACTTCAGTATGGTGCATCACATGTTTATGGAGTTGACGTAGGTTATGGACAGGTAGCTGACAAAATTCGAAGAGATGAACGTGTATCAGTGATAGAACGGACAAATTTAAGATATCTTACTGAACTCCCACAAAATGTTGATTTGGTGACTTTAGATCTCTCATTCATCTCTATTCTCTTGGTCATGCCTGCTGTGGTCAATGTCATGAAGGAAAATGCAGCATTAGTGACTTTGGTTAAACCACAATTTGAAGCTCGTAGATCTCAAGTAGGAAAAGGAGGGATAGTTAAAGATCCCATTGTTCATCAAGAGGTTCTTGAGAGAATTATAACGGGAGTAGAGAATTTCGGATTCTGTTGTAAAGGTTCGATTGAGTCTCCTCTGAAAGGTGCCGAGGGTAATACAGAATTCCTTGTTCACTTCAACAGAATCCAAAGTAAAGCTTCTGATGATATGGAGTAA 942 0.413 MALQFLKHPVTISRGFHNETTFAFLSRLRIPKRPFSVRWDRAQIPTSFRSYATVKSGKVVQVKKKKRLDEICLEKYQQYSRSVIQSWILQGKVYVDGKVINKAGTPVPEKAVVEIIADVPKYVCRAGHKLEAAIEQLGVDVTGKVALDSGLSTGGFTDCLLQYGASHVYGVDVGYGQVADKIRRDERVSVIERTNLRYLTELPQNVDLVTLDLSFISILLVMPAVVNVMKENAALVTLVKPQFEARRSQVGKGGIVKDPIVHQEVLERIITGVENFGFCCKGSIESPLKGAEGNTEFLVHFNRIQSKASDDME 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01540 313 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 61 308 IPR047048 GO:0008168
Vimu9g01540 313 Pfam S4 domain 67 113 IPR002942 GO:0003723
Vimu9g01540 313 NCBIfam TlyA family rRNA (cytidine-2'-O)-methyltransferase 67 296 IPR004538 -
Vimu9g01540 313 SUPERFAMILY Alpha-L RNA-binding motif 64 243 - -
Vimu9g01540 313 CDD AdoMet_MTases 147 226 - -
Vimu9g01540 313 Gene3D Vaccinia Virus protein VP39 118 313 IPR029063 -
Vimu9g01540 313 Pfam FtsJ-like methyltransferase 122 302 IPR002877 GO:0008168|GO:0032259
Vimu9g01540 313 ProSiteProfiles S4 RNA-binding domain profile. 66 126 - -
Vimu9g01540 313 CDD S4 67 115 - -
Vimu9g01540 313 Gene3D - 55 117 IPR036986 GO:0003723
Vimu9g01540 313 SMART s4_6 66 131 IPR002942 GO:0003723
Vimu9g01540 313 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 301 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01540 Vimu-Chr9 24592241 24599360 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01540 K06442 - gmx:100781303 540.806