Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01489 ATGAGTATCAATGAAATGCAAAAAATGGCTTCAAGTAGTGTGCCCAAATGGCACTCTTCATCAGTCACAACCAAAATTGTCAACAACTTAAATCCTATATGCCAAGCTACCCAACAATTAACTCTCAAAGGGAAGTTCGTGATCATACACAACCAAAGCAAATCAATTCCTGGAAAGTTCATTTCTGTCCAGATTTACAGTGGAACTGATGTTGATCCTGAGACTGGTAAAGGAAAATTGAGCGAGAAAGCACATTTCAAACAAGGTGAGAGCATGAAACACAGTCATGATGCACAAAGCACGACATATAAAATTAAGATACATGTTGACTCAAATTTTGGAACTCCAAGAGCTTTCGTTATTCAAAACAAGTACAAGAAGAAGTTCTTCCTTCAGTCTGCATCTATTGAGACTTCTAGCAACCGCATCATTCACTATGATATCAATTCATGGATATATCCAATAAAGAAGACCAAATCTGATAGGCTCTTCTTCTCAAATAGATGTTATCTTCCAAGTCAAACGCCAAGAGCATTAGTGGAACTAAGAAAGGAAGAGCTTGATATATTGAGGGGTGATGGAATGGGAGAAAGAAAGGAATGGGATAGAATCTATGACTACGACTTCTATAACGATCTTGGTGATCCTGAAAAAGGTCCTGAGCACCTTAGACCAGTCCTTGGTGGCACAAAGTTGTTTCCATATCCACGTAGAGGAAGAACAGGTCGAAAACAAAGTACAGCAGGTCCATCTGGTGAGAGTCGGCCACAACCAATGAACTTTGGCATATATGTTCCATCAGATGAGAGATTTGCCCCCAATAAATTGAAGGAGTTGAAATCAAATTGTGTCCATGCTATGGTGCATTTTTTGTCACCAAAGGCAGAATTATTACCACAGAGAAATTCTGCAAACTTTCAATCATTCGAAGAGTTACTTGAGATGTTTTCTAGCAATAGGAGCCAAATAATACAGGGGTGGATGAAAGACAACTTAAAGAAACTGATACCTGTTACGTACTTGAAGGAAATAACTATTGCAAACAAGGAAAATCATGGACAATTGCCAATCCCTCAAATCATATCCGAAAATGAATTGGCTTGGAAAGATGATATAGAGTTTGGAAGACAAATGCTTGCAGGAACTCACCCCACCAGAATACAATGCTTAACGACATTCCCACCTCAGAACAAATACGGAATACAGAGTTCAATAAAGAAATCAATCATAGAACAGAAGCTAGAAGGATGGACACTTTCTCAGGCAATGGAGCAGGGAAGAATTTTCATGCTGGACCACCATGACTACCTTATTCCATATTTGAACAGAATAAACGCAAATGGGGTATGTGCTTATGCATCAAGGACCCTTCTATTCTTAAGGACTGATGGCATGCTTAAGCCATTGGCAATAGAACTTAGCTTGCCAGGTCCATCTCCTCACCTTGAAATCCATAGGGTTTTTCTTCCAGCCAAACAGGGAACACAAGCAGCACTTTGGCAGCTTGCTAAAGCTCATGTATTGGCTAATGATTCTGTTTATCATCAACTAATTAGCCATTGGTTATGCACCCATGCAGTTGTTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTTATGCATCCAATCCATAGGTTGTTGAATCCTCATTTCAAAGATACCATGCACATAAATGCCTTGGCAAGACTCATCCTTATAAACTCTGGAGGAATTCTCGAGAGAATATTATTTCCAGGTGAAATCTGTATGCAGATCTCATGTGACCTCTATAAAGAGTGGAAATTCATTGACCACGGACTCCCAGCTGATCTACTCAAAAGGGGCATGGCTGTACAAGATCCAGACATGAATAACCCCACAGGGATTCAGCTTCTGCTGCTGGACTATCCCTATGCCACTGATGGACTTGAAATATGGGTAGCCATCAAAGAATGGGTCAAAGACTTTTGCTCATTCTTCTACAAAGACAACGAGGCCATTGAGGGTGATGTTGAACTGCAAGCCTGGTGGTCAGAGATTAGAACTCAAGGCCATGGTGACAAACACAATGACAGATGGTGGAACCAAATGACAACACTCTCAAACCTTGTGGAGACACTAACAATCCTCATATGGATTGCTTCTGCGAAACATGCATCTCTAAACTATGGCCAATATGCATACAGTGGCTACCCTCCAAACCGCCCCACACTATGCAGGAAATTTGTTCCTCTAGAAGGGACAGTGGAGTTTGGTGAGTTCCTGAAGGACCCAGATAAGTTTTTCCTCAAGATGCTTCCTGATAGGTTTGAGATGAGTCTTGCAGTTGCATTGGTGAATGTTCTCTCAAATCACACTTGTGATGAGGTCTACTTGGGGTGCCAGCAATCACCAGGGTGGATAGACAATGAAGTGATTCAGAATAGGTTTGCTGAGTTCAAACAAGAACTAAAGGAGATTCAAGCAAGGATCATGCAAAGGAATAGGGATCCTAAGCTTAAGAATAGACGTGGCCCTGCGAACATTGAGTATACTCTTCTCTACCCGGATGCAGCTACTTCTTCTGCCTCAAAAAGAGGAATCACAGGAAGGGGGATACCTAACAGCATATCAATTTGA 2604 0.4113 MSINEMQKMASSSVPKWHSSSVTTKIVNNLNPICQATQQLTLKGKFVIIHNQSKSIPGKFISVQIYSGTDVDPETGKGKLSEKAHFKQGESMKHSHDAQSTTYKIKIHVDSNFGTPRAFVIQNKYKKKFFLQSASIETSSNRIIHYDINSWIYPIKKTKSDRLFFSNRCYLPSQTPRALVELRKEELDILRGDGMGERKEWDRIYDYDFYNDLGDPEKGPEHLRPVLGGTKLFPYPRRGRTGRKQSTAGPSGESRPQPMNFGIYVPSDERFAPNKLKELKSNCVHAMVHFLSPKAELLPQRNSANFQSFEELLEMFSSNRSQIIQGWMKDNLKKLIPVTYLKEITIANKENHGQLPIPQIISENELAWKDDIEFGRQMLAGTHPTRIQCLTTFPPQNKYGIQSSIKKSIIEQKLEGWTLSQAMEQGRIFMLDHHDYLIPYLNRINANGVCAYASRTLLFLRTDGMLKPLAIELSLPGPSPHLEIHRVFLPAKQGTQAALWQLAKAHVLANDSVYHQLISHWLCTHAVVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGILERILFPGEICMQISCDLYKEWKFIDHGLPADLLKRGMAVQDPDMNNPTGIQLLLLDYPYATDGLEIWVAIKEWVKDFCSFFYKDNEAIEGDVELQAWWSEIRTQGHGDKHNDRWWNQMTTLSNLVETLTILIWIASAKHASLNYGQYAYSGYPPNRPTLCRKFVPLEGTVEFGEFLKDPDKFFLKMLPDRFEMSLAVALVNVLSNHTCDEVYLGCQQSPGWIDNEVIQNRFAEFKQELKEIQARIMQRNRDPKLKNRRGPANIEYTLLYPDAATSSASKRGITGRGIPNSISI 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01489 867 Gene3D PLAT/LH2 domain 14 170 - -
Vimu9g01489 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Vimu9g01489 867 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Vimu9g01489 867 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Vimu9g01489 867 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Vimu9g01489 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 867 IPR013819 GO:0016702|GO:0046872
Vimu9g01489 867 MobiDBLite consensus disorder prediction 234 258 - -
Vimu9g01489 867 SMART LH2_4 40 167 IPR001024 GO:0005515
Vimu9g01489 867 Gene3D - 171 273 - -
Vimu9g01489 867 SUPERFAMILY Lipoxigenase 171 867 IPR036226 -
Vimu9g01489 867 Coils Coil 798 825 - -
Vimu9g01489 867 Gene3D - 366 492 - -
Vimu9g01489 867 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Vimu9g01489 867 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Vimu9g01489 867 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Vimu9g01489 867 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Vimu9g01489 867 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Vimu9g01489 867 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Vimu9g01489 867 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Vimu9g01489 867 Gene3D - 493 866 - -
Vimu9g01489 867 ProSiteProfiles PLAT domain profile. 59 166 IPR001024 GO:0005515
Vimu9g01489 867 PANTHER LIPOXYGENASE 49 867 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu9g01489 867 Pfam Lipoxygenase 179 844 IPR013819 GO:0016702|GO:0046872
Vimu9g01489 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 515 529 IPR020833 GO:0016702|GO:0046872
Vimu9g01489 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 52 170 IPR036392 GO:0005515
Vimu9g01489 867 Gene3D - 275 365 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01489 Vimu-Chr9 24033700 24042427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01489 40 867 Acyl Lipid Metabolism Gene Families AT3G22400 46.036 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01489 K00454 - gmx:100797946 1592.02