Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01402 ATGGATTCTGAAATTTTGGATCGTGAAACAGGAGCTGATATTTCAGGGGAAGTGGGAGTGAACTATGGGCGATTGGGGACAAACCTTCCTCCGCCGAGAATCTCGGTGCGTCTCATACAGTCGCTTCTGAAAGCCAAGCGCGTCAAAATCTACGACGCAAACGCGGAAATTCTGGAAGCGCTTCGGAACACGGGAATCCAGGTGTCGATCATGCTCCCGAACGAGCTTGTGGTGAACGCCTCCACCAACCAGACATTCTCGGACCAATGGGTTCGATCCAACGTCGTACCCTTCTACCCAGAAACGCTCATCCGCTACCTCCTCGTCGGCAACGAACTCATTAGCAGCACAGGTGCGTTTCCAACCAGCTTTTTGCCACTTTTAAGCAGATTCAGTTAG 399 0.5163 MDSEILDRETGADISGEVGVNYGRLGTNLPPPRISVRLIQSLLKAKRVKIYDANAEILEALRNTGIQVSIMLPNELVVNASTNQTFSDQWVRSNVVPFYPETLIRYLLVGNELISSTGAFPTSFLPLLSRFS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01402 132 SUPERFAMILY (Trans)glycosidases 18 120 IPR017853 -
Vimu9g01402 132 Gene3D Glycosidases 16 131 - -
Vimu9g01402 132 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 126 IPR044965 GO:0004553|GO:0005975
Vimu9g01402 132 Pfam Glycosyl hydrolases family 17 18 122 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01402 Vimu-Chr9 22510911 22511309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01402 6 115 Glycoside Hydrolase AT4G14080 47.273 3.26e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01402 - - pvu:PHAVU_010G0238000 185.652