Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01233 ATGCTACTATGGACATCTACATTGCCTGTACCTTCAGCTATTGGTTCGGCCTTTGCAGCCATAGTCTTCCTTGGAATTGGAAAAAGTGGTCAAAAGCTTTCAGAACATTTCCTTGAGTATCAGTTGGAAGAAAAAATTAAACCAAAGAAACAAGGAGAAAAAGATGGAAGTACACAAGACAAAAATAAGAGAAGCCTCGGACACACAATTTTTATTAATATCTGGTTGTTCTTTCCGCTGGTTGTTGGATATATCGTAACAGTTTGCCTTGACTTCATCTTCTATGATGCAACACCCGGGGACCTATTCAGATTTTCTGCACTTCTCATGGGAGCGACTCATCTGTTGTTCCTCATCGGTTCTTTGGGGTATAGCCGCCAAGAATTACCCGTTGAAAGCGATCTAAGCAAGATCCATAGAATCTTCATCACAGCTTTACGGAAACTGAGTTTAAACTATCCAACCTCATCGAATTCTTATTACTGGAAGGGCTACAAGCAGCAACACACGTATAATTGTGGTGAAGGAGTAAGGTTATTGCCAAGAGTTCCACGGCTATTCAGGTGGTTGGACAAAGCGGCCATAGTTAAATCAGAGGAAGAAGAAGATTCAAGACATCATAGAGAGAGTCTTGAGACGCAAGAAAAGAAAAAGAAGATTTGCACTGTGAAGGACGTGAGAGATGTCAAAAGCCTTGTTCATATGATTTACCTTGGCCTTACCATCTTTCCTTATAGTTTACTCATTGCTTCTGGGAACACTTTCTTTGTTGCCCAAGCAAGTGAGTTGAAACCAGTTATGAATAAAAGAGGTAACGATATCTCTATTCTATTCTTGATCAAATACGTGGCGACTGACATGTCAGAGTTTGCTTGTTTTCTCATCAGTCTTTCCTTTCGAAAAAAACAAAAATCAAGAGTTTCAAGTTTTACGTTGGAAAGAAAAGCAGCGACAATCATGAGGATTGGATTTGGCATTACGTGTGCAGTAATATGCGGCTTAATAGCATGGCAAGTAGAGATTCGCAGGTTGTCGTCAAAGTTGAATACAACAGTGGCTTTGGTTCCGCAATTTGTGTTACTAGGAATGACAGAGGGACTTGTTGATGGGGGAATAGAGAGATTATTCGATGACCATGTAGCGAAATCGTTGTCGAATTTTGAGGATTCGTTTAGTGAGTTGATGGTTGGTGGTGGAAAACTTCTGATTATACCAATTGTGTGGATTTTCAGCGGGTGGATCAAGGAAACAATCGAAACTAGCCATTTGGACAGGTACTATCTGATGTTGGGGATAATGAACGCTGTGCTGCTTCTAGCTTTTGCATACTACTCCGTTACCTATGCATACAAGGAAGTGTGTCCCGAAGATGAGAAGGTAACCACAGACGAAAGACTGGATGATGCTCATCAACCAGACTCAGAAGACACCTATCAGGAAAGTACTCCCCCATTGAAATTTCTATTGTAA 1470 0.4082 MLLWTSTLPVPSAIGSAFAAIVFLGIGKSGQKLSEHFLEYQLEEKIKPKKQGEKDGSTQDKNKRSLGHTIFINIWLFFPLVVGYIVTVCLDFIFYDATPGDLFRFSALLMGATHLLFLIGSLGYSRQELPVESDLSKIHRIFITALRKLSLNYPTSSNSYYWKGYKQQHTYNCGEGVRLLPRVPRLFRWLDKAAIVKSEEEEDSRHHRESLETQEKKKKICTVKDVRDVKSLVHMIYLGLTIFPYSLLIASGNTFFVAQASELKPVMNKRGNDISILFLIKYVATDMSEFACFLISLSFRKKQKSRVSSFTLERKAATIMRIGFGITCAVICGLIAWQVEIRRLSSKLNTTVALVPQFVLLGMTEGLVDGGIERLFDDHVAKSLSNFEDSFSELMVGGGKLLIIPIVWIFSGWIKETIETSHLDRYYLMLGIMNAVLLLAFAYYSVTYAYKEVCPEDEKVTTDERLDDAHQPDSEDTYQESTPPLKFLL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01233 489 Gene3D MFS general substrate transporter like domains 1 455 IPR036259 -
Vimu9g01233 489 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 16 448 - -
Vimu9g01233 489 Pfam POT family 104 388 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vimu9g01233 489 MobiDBLite consensus disorder prediction 461 489 - -
Vimu9g01233 489 MobiDBLite consensus disorder prediction 461 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01233 Vimu-Chr9 20203778 20205894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01233 18 464 Organic Solute Cotransporters AT3G54450 24.174 1.18e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01233 K26562 - gmx:106798051 414.075