Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01178 ATGAGAGGATTGTTTCTCCCATGGAATCCATTGCGCTTCCACAATCTCACTTTTACTTCCCTTCCAAACAGAGCCTTAACCCTCTCAGCTTCCTTGGAGTCCCTCTCTCAGGTTAGCGCGCGCGAGAGGAGGCGCGAGAGGAGCGAGAGAAGAGAGAGAAAGAGCGGCGCCAACTGGAGGGAGGAGGTGGAGATGAAACTCATCGAGAAGCCGAAGAAGAAAGGTTCGTGGATGGATGAACTGAACCTGGACAACCTCGCCAAGTTGGGTCCTCAATGGTGGGTCATTCGTGTTTTGAGGATTAGGGGTCACGAAATCGCGCAACTCCTCGCTCGCTCCCTCGCTCTAAACTACCCCGACGTCGAATTTAAGATATATGTTCCATCCGTCAATGAGAAAAGGAGATTGAAGAATGGTTCCTACTCTGTTAAACCAAGGCAATTGTTCCCAGGATGTGTTTTCTTGAGATGTGTGATGAACAAAGAATTACATGACTTCATAAGAGAGTACGATGGTGTTGGAGGATTTATTGGTTCCACAGTTGGAAACACAAAGAGACAGATCAATAGACCTAAGCCATTATCTGCTGAAGATGTGGATGCAATCTTCAGACAAGCAAAAGAAGAACAAGAAAAAACTGACCAAGCTTTTGAGGAAGAAGAGAAAAGAACAGCTCTAGTCTCTGGGATTCGTAATACAGAATTAGGACCCGATGATGTTTTGAATGCTATTGTTGATACTAAATCTAAAAGGAGGCATAGGAAAACTTCTGACCAGGTCACAGTCAAAGAGGCCTCTTCTAATCGAAACAAATATAAACTCCTTGTTCCAGGTTCCACTGTTCATGTTGTATCTGGAACCTTTTCAGGGTTTACAGGCACCCTCAAGAAGCTGAATCGAAAAACTAAAATGGCTACTGTGCATTTCACTCTATTTGGGAAAGAGAACATAGCAGACATAGATGTTAATGAAATTGGTCTTGAGACAAACGGTGGCCTGTAG 1002 0.4441 MRGLFLPWNPLRFHNLTFTSLPNRALTLSASLESLSQVSARERRRERSERRERKSGANWREEVEMKLIEKPKKKGSWMDELNLDNLAKLGPQWWVIRVLRIRGHEIAQLLARSLALNYPDVEFKIYVPSVNEKRRLKNGSYSVKPRQLFPGCVFLRCVMNKELHDFIREYDGVGGFIGSTVGNTKRQINRPKPLSAEDVDAIFRQAKEEQEKTDQAFEEEEKRTALVSGIRNTELGPDDVLNAIVDTKSKRRHRKTSDQVTVKEASSNRNKYKLLVPGSTVHVVSGTFSGFTGTLKKLNRKTKMATVHFTLFGKENIADIDVNEIGLETNGGL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01178 333 Pfam Transcription termination factor nusG 92 202 IPR006645 GO:0140673
Vimu9g01178 333 SMART nusgn_4 90 206 IPR006645 GO:0140673
Vimu9g01178 333 Gene3D - 91 208 IPR036735 GO:0006355
Vimu9g01178 333 PANTHER RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG 37 325 IPR043425 -
Vimu9g01178 333 SUPERFAMILY N-utilization substance G protein NusG, N-terminal domain 91 208 IPR036735 GO:0006355
Vimu9g01178 333 SUPERFAMILY Translation proteins SH3-like domain 276 325 IPR008991 -
Vimu9g01178 333 Gene3D - 275 326 IPR014722 -
Vimu9g01178 333 CDD NGN_plant 92 203 - -
Vimu9g01178 333 Coils Coil 203 223 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01178 - - gmx:100815839 506.138