Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00890 ATGAAGAGGCAAAAGCGCTCAGACTCGCAAAACGACAACCCGTTCCAGGTGCTGACGGAGGAGCTCATTTTTCTCATTCTCGACTTTCTCGAAACGGCGCCTTTGGACAAGAAGTCCTTCGCGCTGACGTGCAAAGCGTTCTACGCTGCGGAGGCCAGGCACCGCCGCGCTCTGCGGCCGCTACGGGCGGAGCACCTTCCGGCACTCGCTGCCCGCTACCCGAGCGTCACGGACCTGGATCTCTCGCTCTGCCCGCGCGTGGGTGACGGGGCGCTCGCGCTCGTGGCTCGCGCGTACGGGGAGACGCTGCAGCGGCTGGACCTGTCGCGATCGCGATGGTTCACGGGGAGCGGGCTGTTGAACGTGGGCGCGCGGTGTGGGAATTTGGTGGAGCTGGACCTGTCGAACGCGACGGAGTTGAGGGATGCTGGGGTCGCGGCGGTGGCGCGTGCGAAGAACTTGCGGAAGTTGTGGCTGGCAAGATGCAAGCTGGTGACGGATATGGGGATTGGGTGTATTGCGGTGGGGTGTAGGAAATTGAGGCTGATTTGCTTGAAGTGGTGTGTGGGGATTGGGGATTTGGGTGTGGATTTGGTTGCGATTAAGTGCAAGGAGCTCACATCATTGGATCTCTCATATTTACCTATCACGGAGAAATGTCTTCCGTCAATCTTCAAATTGCAGCTTCTGGAAGATTTGGTCCTTGAAGGATGTTTTGGCATTGACGATGGCAGCCTCGGTGTTGATCTCTTAAAACAAGGGTGCAAGACATTGAAGAAACTTGATATCTCAGGTTGTCAAAACATAAGTCACACGGGGCTATCGAAGCTGACTAGCATTTCTGGAGGTTTAGAGAAACTCATTTTAGCAGATGGTTCTCCTGTCACCCTTGATCTTGTTGATGGTTTAAATAAACTTTCCATGTTGCAATCAATTGTACTAGATGGATGCCCGGTTACTTCTGAAGGATTAAGGGCCATTGGAAGTTTGTGCATTTCACTTAGGGAGCTAAGTCTAAGCAAATGTTTGGGAGTTACAGATGAAGCTCTTTCGTTACTTGTGTCAAAACAAAAAGATTTAAGGAAGCTTGACATCACATGCTGTCGCAAGATAACTGATGTTTCCATTGCCAGCATTGCAAATTCATGCACGGGTCTCACTTCTCTGAAAATGGAGTCATGTACTCTAGTTCCACAGGAAGCACTTGTCTTGGTTGGACAGAAATGCCATTATCTTGAGGAGCTTGACCTAACAGATAATGAAATTGACGATGAAGGTCTTATGTCCATATCTTCTTGTTCTAAGCTATCCAGCTTGAAAATAGGAATATGCCTGAACATAACTGATCGAGGACTTACCTATGTTGGCATGTTTTGCTCAAAATTAAAGGAGTTGGATCTTTACAGATCTACAGGAGTAACTGATGTGGGCATTTCAGCAATTGCTGGCGGTTGCCCTGGCCTTGAGATATTAAACACATCCTATTGTACTAGCATCACGGATAAGGCTCTAATCTCTTTGTCAAAATGTTCAAAATTGAAAACACTTGAAATTCGTGGATGTATTCTTGTTACATCCATAGGACTGGCAGCTATTGCGATGAATTGCAGACAACTTAGCCGTCTAGACATAAAAAAGTGTTACGACATTGATGATAGTGGGATGATTCCCCTTGCTCATTTCTCCCAAAATCTTAGACAGATAAATTTGTCGTATAGCTCAGTTACAGATGTAGGTCTTTTGTCACTTGCTAGTATCAGTTGCCTTCAAAGTTTTACCATGCTTCACCTGCAAGGATTGGTTCCAGGAGGACTGGCTGCAGCTTTATTAGCATGTGGAGGGCTAACAAAAGTGAAGCTTCATCTTTCTCTGAGATCTCTGTTACCTGAGCTACTTATCAGACATGTAGAAGCACGGGGCTGTGTGTTTGAATGGAGAGATAAAGAGTTTCAGGCTGAATTGGACCCGAAATGTTGGAAACTACAATTAGAAGATGTGATGCAATAG 2007 0.4718 MKRQKRSDSQNDNPFQVLTEELIFLILDFLETAPLDKKSFALTCKAFYAAEARHRRALRPLRAEHLPALAARYPSVTDLDLSLCPRVGDGALALVARAYGETLQRLDLSRSRWFTGSGLLNVGARCGNLVELDLSNATELRDAGVAAVARAKNLRKLWLARCKLVTDMGIGCIAVGCRKLRLICLKWCVGIGDLGVDLVAIKCKELTSLDLSYLPITEKCLPSIFKLQLLEDLVLEGCFGIDDGSLGVDLLKQGCKTLKKLDISGCQNISHTGLSKLTSISGGLEKLILADGSPVTLDLVDGLNKLSMLQSIVLDGCPVTSEGLRAIGSLCISLRELSLSKCLGVTDEALSLLVSKQKDLRKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVPQEALVLVGQKCHYLEELDLTDNEIDDEGLMSISSCSKLSSLKIGICLNITDRGLTYVGMFCSKLKELDLYRSTGVTDVGISAIAGGCPGLEILNTSYCTSITDKALISLSKCSKLKTLEIRGCILVTSIGLAAIAMNCRQLSRLDIKKCYDIDDSGMIPLAHFSQNLRQINLSYSSVTDVGLLSLASISCLQSFTMLHLQGLVPGGLAAALLACGGLTKVKLHLSLRSLLPELLIRHVEARGCVFEWRDKEFQAELDPKCWKLQLEDVMQ 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00890 668 Gene3D Ribonuclease Inhibitor 296 406 IPR032675 -
Vimu9g00890 668 FunFam F-box/LRR-repeat protein 3 isoform A 296 401 - -
Vimu9g00890 668 Pfam Leucine Rich repeat 360 380 IPR001611 GO:0005515
Vimu9g00890 668 Pfam Leucine Rich repeat 459 482 IPR001611 GO:0005515
Vimu9g00890 668 Pfam Leucine Rich repeat 408 431 IPR001611 GO:0005515
Vimu9g00890 668 Pfam Leucine Rich repeat 255 277 IPR001611 GO:0005515
Vimu9g00890 668 Pfam Leucine Rich repeat 562 584 IPR001611 GO:0005515
Vimu9g00890 668 SUPERFAMILY RNI-like 65 320 - -
Vimu9g00890 668 SUPERFAMILY RNI-like 459 619 - -
Vimu9g00890 668 Gene3D Ribonuclease Inhibitor 8 281 IPR032675 -
Vimu9g00890 668 PANTHER UNCHARACTERIZED 444 618 - -
Vimu9g00890 668 SMART LRR_CC_2 383 408 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 152 176 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 73 98 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 177 202 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 562 586 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 409 433 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 485 510 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 331 356 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 126 151 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 511 535 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 306 330 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 100 125 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 434 458 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 536 561 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 255 280 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 357 382 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 203 227 IPR006553 -
Vimu9g00890 668 SMART LRR_CC_2 459 484 IPR006553 -
Vimu9g00890 668 FunFam F-box/LRR-repeat protein 3 405 644 - -
Vimu9g00890 668 SUPERFAMILY RNI-like 253 501 - -
Vimu9g00890 668 Gene3D Ribonuclease Inhibitor 407 657 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00890 Vimu-Chr9 14019117 14023061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00890 K10268 - gmx:100803617 1130.16