Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00800 ATGGTAGAATCCGAGAGGAGAGCCACGCTGACGTGGCGCAAAATCCCGGACCTCAAATCCTCCCGCAACGACGTCGTTACTTCACTCCGAGACGGCGTCGCCGTTCTCCGCCTCGCACCCGGCAGTGGCACACGCTGTAATTTCGCGAGCGTGTCAGTGGCAGAAAGGAAATTCGACAAGGAATTCTCGCCGACTGCGGCTCAGCTTCTGCAGCACCCGCTCGCGATGGGGGCATTGGTGCCTAGAGACGCCGCTCTGTTCGTCGCTGGCGCTATCGCCGGCGCCGCCGCGAAATCCGTCACCGCCCCCCTCGACCGCATCAAGCTTCTCATGCAGACTCACGGCGTGCGAGTTGGACAAGAAAGTGTCAAGAGAGCGATTGGTTTCATTGAGGCTATGACTGTAATAGGGAAGGAAGAAGGCATTAGAGGTTATTGGAAGGGCAATCTCCCCCAGGTGATTCGAGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAGAAAATATTCAAGGGAAAGGATGGTGAGCTCTCTGTTGTGGGAAGACTTGCAGCAGGTGCTTTTGCTGGCATGACATCAACTTTTATGACTTACCCGTTAGATGTCCTAAGATTACGATTAGCTGTTGAACCTGGTTATCGAACAATGTCAGAGGTTGCCTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTTTACTATGGCCTTGGGCCTTCTCTCATTGGAATTGCTCCATATATTGCAGTGAATTTCTGTGTTTTTGATTTATTAAAGAAGTCATTGCCAGAGAAATATCAGAAGAGAACTGAAACTTCTTTACTCACTGCTGTTATTTCATCATCTCTTGCCACACTCACATGCTATCCTTTGGACACAGTGCGAAGACAAATGCAATTGAAGGGTACACCTTATAAGTCTGTATTAGATGCCATTTCAGGTATTGTGGAAAGGGATGGAGTTATTGGTTTGTATCGGGGATTTGTGCCAAATGCTTTGAAAAACCTACCAAATAGCAGTCCATGTTTATGTCTGCAGCATCAGGCTTACTACATATGA 1068 0.4794 MVESERRATLTWRKIPDLKSSRNDVVTSLRDGVAVLRLAPGSGTRCNFASVSVAERKFDKEFSPTAAQLLQHPLAMGALVPRDAALFVAGAIAGAAAKSVTAPLDRIKLLMQTHGVRVGQESVKRAIGFIEAMTVIGKEEGIRGYWKGNLPQVIRVIPYSAVQLFAYEIYKKIFKGKDGELSVVGRLAAGAFAGMTSTFMTYPLDVLRLRLAVEPGYRTMSEVALSMLREEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLLTAVISSSLATLTCYPLDTVRRQMQLKGTPYKSVLDAISGIVERDGVIGLYRGFVPNALKNLPNSSPCLCLQHQAYYI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00800 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 264 IPR018108 -
Vimu9g00800 355 PANTHER SOLUTE CARRIER FAMILY 25 73 343 - -
Vimu9g00800 355 SUPERFAMILY Mitochondrial carrier 85 343 IPR023395 -
Vimu9g00800 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 81 173 IPR018108 -
Vimu9g00800 355 FunFam Envelope ADP,ATP carrier protein 83 351 - -
Vimu9g00800 355 Gene3D Mitochondrial carrier domain 84 352 IPR023395 -
Vimu9g00800 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 271 355 IPR018108 -
Vimu9g00800 355 Pfam Mitochondrial carrier protein 86 176 IPR018108 -
Vimu9g00800 355 Pfam Mitochondrial carrier protein 275 344 IPR018108 -
Vimu9g00800 355 Pfam Mitochondrial carrier protein 180 267 IPR018108 -
Vimu9g00800 355 PRINTS Mitochondrial carrier protein signature 99 113 IPR002067 GO:0055085
Vimu9g00800 355 PRINTS Mitochondrial carrier protein signature 280 302 IPR002067 GO:0055085
Vimu9g00800 355 PRINTS Mitochondrial carrier protein signature 86 99 IPR002067 GO:0055085
Vimu9g00800 355 PRINTS Mitochondrial carrier protein signature 196 214 IPR002067 GO:0055085
Vimu9g00800 355 PRINTS Mitochondrial carrier protein signature 148 168 IPR002067 GO:0055085
Vimu9g00800 355 PRINTS Mitochondrial carrier protein signature 237 255 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00800 Vimu-Chr9 12479063 12483003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00800 5 343 Organic Solute Cotransporters AT3G51870 69.855 9.71e-170 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00800 K14684 - gmx:100796878 575.474