Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00565 TTGGGTCAGCGGAGTGCTTACCCTATTGGCTACACTGAAAGAAGTTCAGAACAAAGCCAGTTCTTCCAGTCCCTCACCGCCGTGTGCCGCCGTCCAATTCCAACGAAGCTCCCTGCCGCCGCGTACCATACCGCCATACTCCGGGAAGCACTGCTTTTTAAGCATAGCAAGATGGAAACTTGGGAAAGTTCTGGCGGTATTATTGAAATCAATTCTCAAAGTCTGGGAGATGGTGGTAGTAATGCACTGATTTTGCCTGCAAAGAGGATGAAGAAAAGGAAAGGGAAGGAACAGGATCATCGAAAAGCTCAATCAAATAAGAAACAGAAATTGAGCAAACCTCAGAAGAGGAAGAAGAAGTTTGAGGATGACAAGGAGAAACAACGGCTGCAGGAAGAAGCTATTAAGACAATGAACGAGAACACACTTCCAGAGTATGCATATCATCTTTTGCAGTCTTCATGCAATATAAATCGGAATGAGACTATGAAGGAAAAGCGTAGGAGGGCTGTTCATTTATTGAAAGAAGGATTGCAGGTTTCATATGATGGATTGTCTAAGAAACCTGAGATGGACGAGATTCATTTAGCACAGGATGATGAAGTTGAAGAAAATGACATTCAAATTCAACCCATTAGATCAGAAGAAGTCTTAAATACAACTTCAACACCTATGGAGTCCTCTGAAGAACCAGTTCATGGCAATGAAGTTGAAAATTATAAATATGTTTCTGGAAATCTTGCTGACATTTCCATTGATAAACAACTTTATGAAATCAGAAGTTCTCCATTGTCTTGTTCGACCAATGAAATAAAAAACACCAATTTAAAGGATAGAACAGATGAGAACCATAATCCGAATGGATTGAGCAACCTTGATTATTCTGCACCAAGGCCTTCAAATGTTCCTACTGTTGTGCACGTGTATAGACCAAGTGAAGTTGAAGATAAAAGAAAGGATTTGCCTATAGTTATGATGGAGCAAGAGATAATGGAAGCTATAAATGACTGTTCGAGTGTTATCATATGCGGAGAAACTGGGTGTGGTAAAACAACTCAAGTTCCTCAGTTTCTTTATGAAGCTGGTTATGGCTCAAGTAAGGGTATCATTGGTGTTACTCAACCACGTCGAGTGGCTGTTCTTGCTACAGCTAAGCGTGTGGCATATGAGCTTGGTCTTCATTTAGGGAAGGAGGTTGGTTTTCAAGTCAGATATGACAAGAAGATTGGTGAAAATTGTTCTATCAAGTTTATGACTGATGGAATTTTGCTACGAGAAGTTCAGAATGATATTTTGTTGAGACGTTATTCTGTCATAATTCTTGATGAGGCCCATGAGAGGAGCTTGAACACAGACATTTTGATCGGGATGCTCTCACGTGTAATTAAAACTCGCCAAATGATTTATAATGAACAACAGAAGATGATACTTTCAGGGGAAATTATAAGTCCTGAAAAAATGATTTTTCCCTTAAGACTTGTGCTTATGAGTGCCACCTTGCGAGTACAAGACTTCACTTCTGGGAAGTTATTCCATACTGCTCCACCTGTTATAGAAGTTCCTACAAGGCAATTTCCAGTAGCAGTATACTTCTCAAAGAAAACAGAGAAAACAGATTACATTGGAGAAGCATATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTCTTTGTTACTGGGCAAAGGGAAGTAGAGGACTTGTGTAGGAAATTACGGAAAGCATCAAGGGAATTTGTCAAGAAGAAAGTTGAAGGGTCTGTGCAAACTGATAGCACTGTGATCAATGAAACAAACTTTGTTGGGGGAATAAATATTAGCGAGATTAATGAAGCATTTGAGGTTCAGGGAAGTTCATCCATCCAGCAAACTGATAGATTTAGTGGTTATGATGAAGATGAAGATAATGCAAATGAGAATGAATCTGAATTTTCTTATGACACTGAAACAGAGAGTGAACTGGAATTTGATGATGATAATCTTGTGCTTCCAGAGAACAATAGTAATATTGTGGATGCCTTAGGACAGGTGGGAAGTCTTGCTTCACTAAAGGCTGCTTTTGAAAAATTGTCTTGGCAGGCCACATCAAGCTCCTCAATTGAAGAGAAGACATTTTCTGCAAACATAGAAAGTAATTTAGACCAATCAAAAGTTCTGGGGGAGAAAACAACTAAAGAAAATTGCAGTACTCCAGGTGCACTCTGTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTTCGTGTATTTGAAAAGGTTGGGGAGGGAGAGCGGCTTGTAGTTGTTGCTACAAATGTTGCTGAAACATCTTTAACTATCCCAGGGATAAAGTATGTGGTTGATACCGGAAGAGAAAAGGTCAAGAATTATGACCCCTCTAATGGCATCGAGACATATGAAATACAATGGATAAGTAAGGCATCTGCTGCACAGCGTGCAGGCAGATCTGGAAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCTGCAGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCCGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTAAAATCCATGCATATTAAAAAGGTTGCAAATTTCCCATTTCCTACATCTCTTAAAGCTGCTTCTTTGCTCGAAGCTGAAAATTGCTTGAAATCTCTTGAAGCACTTGATAGCAAGGATGGACTTACACCATTGGGAAAAGCCATGGCACATTATCCCTCGAGTCCTCGTCATTCTAGAATGCTCCTCACTGTTATTAAAAATACAAGACATGAGTTTAAATGTAATTTAAATTTGCTTTTGGCATACGCTGTTGCAGCTGCTGCGGCATTGAGCTTGTCAAATCCTTTTATAATGCAATATGAAGATGATAACAGCAGAGATTCAAAGATGTCTGAGAAATCTGGACTGGGATATGATGAGAAAGACTTTGATAAAAAGGGAAAGTCAAGCAGAAAGAAACTAAAAGAAACGGCAAAAGTTGCACGAGAAAAATTTCGAGTGGTCACTAGTGATGCCCTCACCATAGCATATGCTTTACAGTGTTTTGAACATTCACAGAAATCAGTAGAATTCTGTGATGACTATGCTTTGCATTTCAAAACTATGGATGAAATGTCCAAACTTCGACAACAGCTACTTAAACTGGTCTTTTATCAGATTGATAAAGGTGGTCTTGAAGAAGAGTACTCATGGATCCGTGGAACATTAGAGGATGTTGAATGTGCTTGGCAGGTTTCTTCTGAAAAGTATCCACTTTCTCTTGTTGAGGAAAGGCTAATCTGTGAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTACATCTTTTTCTAGGGCCTTCGATGGAGAGAAAACCTCTCGTGCCTTAAGGTATCAGTCATGCATGGTAGATGAAAGTGTTTTACTTCATCGTTGGTCATCACTTTCCACTGTAGGCCCTGAGTATTTGGTTTACAATGAACTATTGGAGACCAAAAGACCAAAGAAAGAAGGGATAAGTACCAAGAGAGTGTATATGCATGGGGCAACAAGGGTAGAGCCTGCTTGGCTTGTTGAGCATGCTAAGTCTTCATGCGTCTTCTCAGCTCCTCTGAAGGATCCTAGATCTTATTATGATGCCCAGACTGACCAAGTAAAATGTTGGGTAACCCCAACCTTTGGCCGTTTCTCTTGGAAGCTTCCAATGCATTCATTGCCCATTAGCAATGATGAAGATCGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCCTGTTTAAAATCTGTTCGAAAATATATGTCAGCTCCCCCTGAAAGTATCATGAAGAAAGAAGCATTTGGTCAGAAAAGGGTGGTAAATCTTTTAAGTAAGTTAAAAAGCAGGCTGATTGATAGCTCTGCTGTGCTAAGAATGGTGTGGAAGGAGAACCCAAGGGAACTATATACAGAAATTTTGGATTGGTTTCAGCATAGTTTTCACAAGCACTTTGAAGAGTTATGGCTACAAATGCATAACGAATTGCTTATGGGGACACAACAAGGCTCTAAGCATAAAAGTTCTAGAAAAAAGAAAGGAAAATCTAAAGAATCATCATAA 4128 0.4016 MGQRSAYPIGYTERSSEQSQFFQSLTAVCRRPIPTKLPAAAYHTAILREALLFKHSKMETWESSGGIIEINSQSLGDGGSNALILPAKRMKKRKGKEQDHRKAQSNKKQKLSKPQKRKKKFEDDKEKQRLQEEAIKTMNENTLPEYAYHLLQSSCNINRNETMKEKRRRAVHLLKEGLQVSYDGLSKKPEMDEIHLAQDDEVEENDIQIQPIRSEEVLNTTSTPMESSEEPVHGNEVENYKYVSGNLADISIDKQLYEIRSSPLSCSTNEIKNTNLKDRTDENHNPNGLSNLDYSAPRPSNVPTVVHVYRPSEVEDKRKDLPIVMMEQEIMEAINDCSSVIICGETGCGKTTQVPQFLYEAGYGSSKGIIGVTQPRRVAVLATAKRVAYELGLHLGKEVGFQVRYDKKIGENCSIKFMTDGILLREVQNDILLRRYSVIILDEAHERSLNTDILIGMLSRVIKTRQMIYNEQQKMILSGEIISPEKMIFPLRLVLMSATLRVQDFTSGKLFHTAPPVIEVPTRQFPVAVYFSKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFVKKKVEGSVQTDSTVINETNFVGGINISEINEAFEVQGSSSIQQTDRFSGYDEDEDNANENESEFSYDTETESELEFDDDNLVLPENNSNIVDALGQVGSLASLKAAFEKLSWQATSSSSIEEKTFSANIESNLDQSKVLGEKTTKENCSTPGALCVLPLYAMLPAAAQLRVFEKVGEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGIETYEIQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKSLEALDSKDGLTPLGKAMAHYPSSPRHSRMLLTVIKNTRHEFKCNLNLLLAYAVAAAAALSLSNPFIMQYEDDNSRDSKMSEKSGLGYDEKDFDKKGKSSRKKLKETAKVAREKFRVVTSDALTIAYALQCFEHSQKSVEFCDDYALHFKTMDEMSKLRQQLLKLVFYQIDKGGLEEEYSWIRGTLEDVECAWQVSSEKYPLSLVEERLICEAICAGWADRVAKRITSFSRAFDGEKTSRALRYQSCMVDESVLLHRWSSLSTVGPEYLVYNELLETKRPKKEGISTKRVYMHGATRVEPAWLVEHAKSSCVFSAPLKDPRSYYDAQTDQVKCWVTPTFGRFSWKLPMHSLPISNDEDRVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKKEAFGQKRVVNLLSKLKSRLIDSSAVLRMVWKENPRELYTEILDWFQHSFHKHFEELWLQMHNELLMGTQQGSKHKSSRKKKGKSKESS 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00565 1375 SMART ultradead3 319 530 IPR014001 -
Vimu9g00565 1375 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 437 446 IPR002464 -
Vimu9g00565 1375 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 518 IPR014001 -
Vimu9g00565 1375 Pfam DEAD/DEAH box helicase 328 504 IPR011545 GO:0003676|GO:0005524
Vimu9g00565 1375 CDD SF2_C_RHA 736 835 - -
Vimu9g00565 1375 Gene3D - 524 620 IPR027417 -
Vimu9g00565 1375 Gene3D - 706 848 IPR027417 -
Vimu9g00565 1375 FunFam ATP-dependent RNA helicase DEAH13 524 629 - -
Vimu9g00565 1375 CDD DEXHc_DHX37 321 520 - -
Vimu9g00565 1375 MobiDBLite consensus disorder prediction 639 656 - -
Vimu9g00565 1375 Gene3D - 878 984 - -
Vimu9g00565 1375 FunFam ATP-dependent RNA helicase DHX37/DHR1 278 523 - -
Vimu9g00565 1375 MobiDBLite consensus disorder prediction 622 656 - -
Vimu9g00565 1375 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1104 1202 IPR011709 -
Vimu9g00565 1375 Pfam Helicase conserved C-terminal domain 728 827 IPR001650 -
Vimu9g00565 1375 Pfam Helicase associated domain (HA2) 889 1018 IPR007502 GO:0004386
Vimu9g00565 1375 SMART ha2_5 888 1020 IPR007502 GO:0004386
Vimu9g00565 1375 SMART helicmild6 727 827 IPR001650 -
Vimu9g00565 1375 MobiDBLite consensus disorder prediction 268 297 - -
Vimu9g00565 1375 MobiDBLite consensus disorder prediction 89 128 - -
Vimu9g00565 1375 Gene3D - 270 523 IPR027417 -
Vimu9g00565 1375 MobiDBLite consensus disorder prediction 1355 1375 - -
Vimu9g00565 1375 PANTHER ATP-DEPENDENT RNA HELICASE 223 1206 - -
Vimu9g00565 1375 FunFam ATP-dependent RNA helicase DEAH13 874 1004 - -
Vimu9g00565 1375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 931 IPR027417 -
Vimu9g00565 1375 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 687 868 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00565 Vimu-Chr9 6929099 6935380 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00565 K14780 - gmx:100788201 2143.62