Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00564 CCTCACGACTCCAACGGTTCTCTCTCTCAACAGCTTCCGATAAGCAAATCCGCGTTCGCAGCTCCAATCACCACCTCTTGCTGCAACCAATTAACCATGTCGTTTTCCGATTCCGAAACCACCTCCGGCGGATCATCGGACTACAAGCCGTTCCGCCAAATCAGCCGTGACCGGCTATTATATGAAATGCTTAGATCGGCAAAGTCACCGGATTCGAAGTCATGGAAGGTGCTCATAATGGATAAAGTCACTGTAAAAGTTATGTCACATTCGTGTAAAATGGCAGATATTACGGACCAAGAAATTTCCTTGGTGGAAGACCTCTTTCGGAGAAGGCAGCCATTACCATCTTTGGATGCTGTTTATTTCATGCAACCTTCTAAAGAGAATGTGGTCATGTTTCTGTCTGATATGTCTGGAAGGGAGCCCCTCTATAAGAAAGCCTATATATTTTTCAGTTCACCGATCCCAAAGGAACTTGTAAACCACATCAAGTGTGATACAAGTGTTTTACCTCGCATAGGAGCATTGAGAGAGATGAATTTGGAATATTTTCCCGTAGATAGCCAGGGGTTTACTACTGATCAAGACACAGCAATGGACGATCTTTATGGCAACGTTGAGAATACTCGCAGATTTAACACCTGCTTGAATAGTATGGCTATTCGAATAGCTACTGTTTTTGCTTCATTAAAGGAGTTACCATGTGTGTGGTATCGTGCTTCAAAGGAAAGTGACGAGTCTACTGCAGCAAAAGTTCGAGAATTAGTTCCTACAAAGCTTGCTAGTGCTGTTTGGGACATGGTTTCTAAATATAAATCTACCATTCCCAGCTTTCCACAAAATGAAACTTGTGATCTGCTCATTGTTGACAGAACCATAGATCAGGTTCCTAGCAAAACCGGGGGTGACCCTGAGATCAAGGAGGTCCTTCTACAAGATCATGATCCAGTCTGGCTTGAACTTCGCCACGCTCATATAGCAGATGCTAGTGAAAGACTGCATGAAAAGTTTACCAATTTCGTATCAAAGAACAAAGCAGCGCAAATTCAACAAAGGGGAAGAGATGGTGGTGAAATATCTACCCGAGATTTGCAAAAAATGGTTCAAGCGTTGCCGCAATACACTGAGCAAGTGGAAAAGATTTCACTCCATGTGGAGATAGCTGGAAAGATCAACAAAATTATCAGAGAAACAGAACTTAGAGAGCTTGGACAGCTGGAACAAGATCTTGTTTTTGGGGATGCTGGATCAAAGGAAGTTATTCAATTTTTAAGAAAGCAGAGTACACCTGAAAATAAGTTGCGTTTGTTGATGATTTATGCAATTGTCTACCCTGAAAAGTTTGAGGGTGATAGAGCTTCAAAGCTAATCCAGTTGGCAAAACTATCACCTGATGACTTGAAAGTTATCACTAACATGCAACTGCTGGCGGGATCATCAAACAAGAAATCTTCTGGTGGAGAAGGTGGTTTCTCACTCAAGTTCAATAACCAGAAGACAAAACATGCAGCACGCAAAGATCGGACTGACGAAGAGGAAGAAACGTGGCAACTATTTCGATTTTTTCCCATGATAGAGGAGCTCATTGAAAAGCTCAATAAGAGTGAATTGCCTAAGAATGAATATTCGTGTATAAATGAGCCAAGTAAAAGTAGTGCCCAAGGAGTTCCAGCAAAAAGCAGCAAAACTCCCCAAACAGCCCCAACCACTGCTCCTCATTCAATTAGATCTAGGAGGACAGCAAACTGGGGAAGATCTCGTACTTCAGATGATGGATATTCAAGTGACTCCACGTTGAAGAATGTGCTTTCTGATTTCAAGAAGATGGGAAAGCGAATCTTTATATTTATTATTGGCGGGGCTACTCGGTCCGAGAAATTAAGGTCATTGGGCGAACGACCAGTTGAACCACCATTGAATGGCCTCGGCATATAA 1938 0.4241 PHDSNGSLSQQLPISKSAFAAPITTSCCNQLTMSFSDSETTSGGSSDYKPFRQISRDRLLYEMLRSAKSPDSKSWKVLIMDKVTVKVMSHSCKMADITDQEISLVEDLFRRRQPLPSLDAVYFMQPSKENVVMFLSDMSGREPLYKKAYIFFSSPIPKELVNHIKCDTSVLPRIGALREMNLEYFPVDSQGFTTDQDTAMDDLYGNVENTRRFNTCLNSMAIRIATVFASLKELPCVWYRASKESDESTAAKVRELVPTKLASAVWDMVSKYKSTIPSFPQNETCDLLIVDRTIDQVPSKTGGDPEIKEVLLQDHDPVWLELRHAHIADASERLHEKFTNFVSKNKAAQIQQRGRDGGEISTRDLQKMVQALPQYTEQVEKISLHVEIAGKINKIIRETELRELGQLEQDLVFGDAGSKEVIQFLRKQSTPENKLRLLMIYAIVYPEKFEGDRASKLIQLAKLSPDDLKVITNMQLLAGSSNKKSSGGEGGFSLKFNNQKTKHAARKDRTDEEEETWQLFRFFPMIEELIEKLNKSELPKNEYSCINEPSKSSAQGVPAKSSKTPQTAPTTAPHSIRSRRTANWGRSRTSDDGYSSDSTLKNVLSDFKKMGKRIFIFIIGGATRSEKLRSLGERPVEPPLNGLGI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00564 645 MobiDBLite consensus disorder prediction 480 499 - -
Vimu9g00564 645 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 283 396 IPR043127 -
Vimu9g00564 645 MobiDBLite consensus disorder prediction 480 510 - -
Vimu9g00564 645 SUPERFAMILY Sec1/munc18-like (SM) proteins 51 626 IPR036045 -
Vimu9g00564 645 MobiDBLite consensus disorder prediction 544 597 - -
Vimu9g00564 645 Pfam Sec1 family 307 626 IPR001619 GO:0016192
Vimu9g00564 645 Pfam Sec1 family 76 298 IPR001619 GO:0016192
Vimu9g00564 645 Gene3D - 399 522 - -
Vimu9g00564 645 Gene3D - 45 179 IPR043154 -
Vimu9g00564 645 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 62 626 IPR001619 GO:0016192
Vimu9g00564 645 PIRSF VPS45_Sec1 297 633 IPR001619 GO:0016192
Vimu9g00564 645 PIRSF VPS45_Sec1 46 299 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00564 Vimu-Chr9 6909018 6923258 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00564 K15292 - gmx:100783301 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00564 9 6909018 6923258 Vimu9g00564 9 6909018 6923258 ECH