Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00549 ATGTTGCAACCCTTCACTACTTTCTTCACCTTTCTTCTTAGGAAGGCCAAATCCATGTTCAAGCAACCAAGAATCATGATGAGTGCATGCTGTAAAGAAAACCTACCCAAGAGAAAATTTTCTGGCTTGTCAACAACCTCTTCTTTCCTTCAAATGGAGCTTTCCTCTCAGTTTCATCAAGTTTTCAAGCTGATTGACTCTAATGGGGATGGGAAGATCTCAACCAGTGAGCTGAGTGAAGTGCTTGCATGCCTTGGATACAACAAGTGCACTGCTGCAAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTTGTCATGAATGGCATGGAGAAAGAAAAGGAACAAGAAGAAGAAGAAGAAGAAAAGATTGATGGTTATCTGATGGATGCTTTTCTTGTCTTTGATACTGACAAGAATGGCCTCATCTCAGCGAAGGAATTGCACAGAGTTCTCTTCAATCTAGGGTGTGAAAACTGCAGCCTCAGAGACTGCAAACGAATGATCAAAGGTGTTGATAAGAACGGAGATGGCTTTGTAGATTTCGAAGAATTTCGATGCATGATGCGAAATGGAGTTACAAGTTAG 630 0.4206 MLQPFTTFFTFLLRKAKSMFKQPRIMMSACCKENLPKRKFSGLSTTSSFLQMELSSQFHQVFKLIDSNGDGKISTSELSEVLACLGYNKCTAAKEAEGMVRVLDFNGDGFVDLDEFMVVVMNGMEKEKEQEEEEEEKIDGYLMDAFLVFDTDKNGLISAKELHRVLFNLGCENCSLRDCKRMIKGVDKNGDGFVDFEEFRCMMRNGVTS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00549 209 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 141 204 - -
Vimu9g00549 209 FunFam Calmodulin 1 47 206 - -
Vimu9g00549 209 ProSitePatterns EF-hand calcium-binding domain. 66 78 IPR018247 -
Vimu9g00549 209 Gene3D - 140 207 - -
Vimu9g00549 209 Gene3D - 7 139 - -
Vimu9g00549 209 ProSiteProfiles EF-hand calcium-binding domain profile. 137 172 IPR002048 GO:0005509
Vimu9g00549 209 ProSiteProfiles EF-hand calcium-binding domain profile. 174 209 IPR002048 GO:0005509
Vimu9g00549 209 ProSiteProfiles EF-hand calcium-binding domain profile. 91 126 IPR002048 GO:0005509
Vimu9g00549 209 Coils Coil 124 144 - -
Vimu9g00549 209 ProSitePatterns EF-hand calcium-binding domain. 104 116 IPR018247 -
Vimu9g00549 209 ProSiteProfiles EF-hand calcium-binding domain profile. 53 88 IPR002048 GO:0005509
Vimu9g00549 209 SUPERFAMILY EF-hand 56 204 IPR011992 -
Vimu9g00549 209 CDD EFh 57 121 IPR002048 GO:0005509
Vimu9g00549 209 CDD EFh 141 204 IPR002048 GO:0005509
Vimu9g00549 209 ProSitePatterns EF-hand calcium-binding domain. 150 162 IPR018247 -
Vimu9g00549 209 Pfam EF-hand domain pair 142 204 IPR002048 GO:0005509
Vimu9g00549 209 Pfam EF-hand domain pair 57 118 IPR002048 GO:0005509
Vimu9g00549 209 ProSitePatterns EF-hand calcium-binding domain. 187 199 IPR018247 -
Vimu9g00549 209 SMART efh_1 178 206 IPR002048 GO:0005509
Vimu9g00549 209 SMART efh_1 95 123 IPR002048 GO:0005509
Vimu9g00549 209 SMART efh_1 57 85 IPR002048 GO:0005509
Vimu9g00549 209 SMART efh_1 141 169 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00549 Vimu-Chr9 6672002 6672631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00549 42 206 EF-hand Containing Proteins AT1G24620 41.765 4.70e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00549 - - gmx:100779339 290.041