Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00525 CAGATCAGTAATTTTGAGTATCTAATGCAACTCAATACATTGGCTGGGCGTAGTTATAATGATATAACCCAGTATCCAGTTTTCCCCTGGATTCTTTCTGATTACAGTTCAAAGAGCTTGGATCTTTCTAATCCTTCTTCTTACCGGGATCTTTCAAAGCCTATTGGAGCACTGAACCCAGATCGTCTTAAAAAATTTCAAGAGAGATACTCCAGCTTTGATGACCCCGTAATACCCAAATTCCACTATGGATCACACTACTCCAGTGCAGGAACAGTTTTGTATTATCTTATTAGGGTTGAACCATTCACTACTCTTGCCATCAAACTTCAAGGTGGAAAATTTGATCATGCAGATCGAATGTTTTCTGATATTTCTGCTACTTGGAATGGAGTTCTTGAGGACATGAGTGATGTGAAGGAATTGGTTCCTGAGCTATTTTACCTCCCTGAAGTCCTCACAAATGAAAATTCAATTGATTTTGGCACAACACAATTGGGAGGAAAGCTTGATACTGTAAAACTTCCTGCTTGGGCTGAGAACCCAGTTGATTTTGTGCACAAGCATAGGATGGCTCTGGAGAGTGAATATGTATCTTCTCATTTACATGAGTGGATTGATCTCATATTTGGGTATAAGCAACGGGGAAAAGAAGCTATTGCATCAAATAATGTTTTCTTTTACATTACTTATGAAGGGACAGTGGATATTGATAAAATATCTGACCCGGTGCAACAGCATGCCACACAAGATCAGATTGCTTATTTTGGACAAACACCATCCCAACTTTTGACTATTCCACACTTGAAGAAGAAGCCACTATCAGAAGTTCTTCATTTGCAGACAATATTCCGCAACCCAAAAGCAATCAAGTCATATCCCATTCCATCACCTGAACACTGCAATCTACCAGCATCTGCCATCCATGCGTCTTCAGATATGGTTGTGGTTGTTGATTTAAATGCACCAGCAGCTCATGTTGCACAGCACAAGTGGCAACCCAATACACCTGATGGGCAGGGTACACCATTCCTCTTTCATCATGGAAAGGCTACATCAGGTTCCGCTGGTGGGATTATACGCATGTTAAAAGGTCCTGCTGGGACTGGTGAAGAGTGGCAGTATCCCCAAGCATTGGCTTTTCCTGTTTCTGGAATTAGAAGCCAAGCTATTGTCTCTATAACACGTGACAAAGAAATTATTACTGGTGGGCATGCTGATAATAGTATCAGGTTAATATCCTCAGATGGAGCAAAAACCATGGAAACAGCCTATGCTCACTGTGCTCCTGTAACTTGCCTTGGTCTTTCACCGAATAGTGACTACCTGGTGACAGGATCTCGAGATACAACAGTATTACTCTGGAGAATACATAGGGCACTTGCATCGCATTCAAGTGTCACATCAGAATCTTCTACTGGGAATGGCACTGGCATGCGGCCTTCAACTGGCAGTAGTTCTTCATCACTTTTGTTGATGGAAAAGAATCGTAGACGCCGTATTGAGGGCCCTATACAGGTACTTAGGGGGCACCACAGTGAAATACTCAGTTGTTGTGTTAACTCAGGTCTTCGAATGGTTGTTTCATGCTCCCACTCATCAGATGTTCTCCTACACTCTATAAGAGAGGGACGTTTGGTCAGAAGGCTGGATGGCGTGGTGGCTCACACTGTCTCCCTTTCCTCTGAAGGGGTTGTCGTGGTGTGGAATGAATCAAAGCATATTCTCAGTACCTTTACTCTTAATGGTGTTCTGATTGCAAAATCAGAATTACCTTTCTCTAGCAGCATTTGTTGCATGGAAATTTCTCTTGATGGATGGAGTGCTTTGATTGGAATTAATTCTCAAGAAAATGGTAAAGCCTTCAATAGCAGTTGGAATTCGCAATCCAGTAATTCAGGTAATGAAGATTTTTATTCAGACTCAGAAGAAACTCACGATAGCAACAGAATAAATGCTCCATCACCTTCAATTTGCTTCCTGGATTTGCACACTTTGGAGGTGTTTCATGTGTTGAAGCTGAGAGAAGGACAGGATATCACAGCTCTTGCTCTAAATAAGGATAACACAAATCTTTTGGTTTCAACTTGGGATAAACAGTTGATTGTCTTCACTGATCCGACTTTGAGCTTGAAAGTAGTCGATCAAATGCTCAAGCTTGGTTGGGAAGGTGATGGGCTGAAGCATCTCATAAAATGA 2199 0.417 QISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSKSLDLSNPSSYRDLSKPIGALNPDRLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLIRVEPFTTLAIKLQGGKFDHADRMFSDISATWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGGKLDTVKLPAWAENPVDFVHKHRMALESEYVSSHLHEWIDLIFGYKQRGKEAIASNNVFFYITYEGTVDIDKISDPVQQHATQDQIAYFGQTPSQLLTIPHLKKKPLSEVLHLQTIFRNPKAIKSYPIPSPEHCNLPASAIHASSDMVVVVDLNAPAAHVAQHKWQPNTPDGQGTPFLFHHGKATSGSAGGIIRMLKGPAGTGEEWQYPQALAFPVSGIRSQAIVSITRDKEIITGGHADNSIRLISSDGAKTMETAYAHCAPVTCLGLSPNSDYLVTGSRDTTVLLWRIHRALASHSSVTSESSTGNGTGMRPSTGSSSSSLLLMEKNRRRRIEGPIQVLRGHHSEILSCCVNSGLRMVVSCSHSSDVLLHSIREGRLVRRLDGVVAHTVSLSSEGVVVVWNESKHILSTFTLNGVLIAKSELPFSSSICCMEISLDGWSALIGINSQENGKAFNSSWNSQSSNSGNEDFYSDSEETHDSNRINAPSPSICFLDLHTLEVFHVLKLREGQDITALALNKDNTNLLVSTWDKQLIVFTDPTLSLKVVDQMLKLGWEGDGLKHLIK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00525 732 SUPERFAMILY WD40 repeat-like 392 709 IPR036322 GO:0005515
Vimu9g00525 732 FunFam neurobeachin isoform X1 1 271 - -
Vimu9g00525 732 Gene3D BEACH domain 1 271 IPR036372 -
Vimu9g00525 732 Gene3D - 349 481 IPR015943 GO:0005515
Vimu9g00525 732 Pfam Neurobeachin beta propeller domain 390 605 IPR046851 -
Vimu9g00525 732 Gene3D - 482 718 IPR015943 GO:0005515
Vimu9g00525 732 SMART Beach_2 1 271 IPR000409 -
Vimu9g00525 732 MobiDBLite consensus disorder prediction 624 638 - -
Vimu9g00525 732 MobiDBLite consensus disorder prediction 466 490 - -
Vimu9g00525 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 465 IPR001680 GO:0005515
Vimu9g00525 732 MobiDBLite consensus disorder prediction 624 649 - -
Vimu9g00525 732 Pfam Beige/BEACH domain 1 270 IPR000409 -
Vimu9g00525 732 CDD Beach 1 271 IPR000409 -
Vimu9g00525 732 SMART WD40_4 665 705 IPR001680 GO:0005515
Vimu9g00525 732 SMART WD40_4 501 540 IPR001680 GO:0005515
Vimu9g00525 732 SMART WD40_4 417 456 IPR001680 GO:0005515
Vimu9g00525 732 SUPERFAMILY BEACH domain 2 271 IPR036372 -
Vimu9g00525 732 ProSiteProfiles BEACH domain profile. 1 271 IPR000409 -
Vimu9g00525 732 PANTHER BEIGE/BEACH-RELATED 1 707 - -
Vimu9g00525 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00525 Vimu-Chr9 6226778 6242597 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00525 - - vra:106778958 1397.1