Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00502 ATGGGTTTGTTTTCTGGGATTTTCATGGGGTTGGTGTTCGGCATCGCATTGATGGCTGGATGGGCACGCATGATGAGGTACCGAAGCGCCAAAAGAATTGCAAAGGCTGTGTTGGAAAAAATGTTGATGAATAGAGAACATCACGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGTGAGTATGCTTGCACCCTTCCTTTCATTATAAGGGTTGAGTTAGATATTAAATCTAAATTCTGTAATGTTATTGGAGTTTATCCTAGATCTATTGTTGAACCACTCTATGGACTGCAAGCCAGAGATGCTGCAACTTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCACCTGGAATTACTTCATTGAAGTTCAGCAAACTCTCACTTGGAAATGTGGCCCCAAAAATAGAAGGTATTCGTGTTCAGAGTCTTACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAGGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTACAGGTTTTCACCATTATCCGTGTTATATTCCAACTTTCTGAAGAGATCCCTTGCATTTCTGCAGTTGTTGTAGCTCTACTTGCTGAGCCAAAGCCAAGGATTGACTATACTCTGAAAGCTGTTGGTGGAAGTTTAACAGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAATTCAATTGTTACTGACATGCTTCAATGGCCCCATAGGATTGTGGTTCCACTTGGTGGTATTCCTTGTGATCTAAGTGAGCTGGAGCTTAAACCCCAAGGAAAACTTTCAGTGACTGTAGTGAAAGCGACTGCTTTGAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTGTGCATATTCGACCATTGTTCAAGTATAAAACCAAAGTTGTTGATAACAACTTGAATCCTACTTGGAATGAGAGATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTAGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTGCAGGTACCCCTTAATGATCTAGACAACCAAACTGAAAAGGAGATGGAGTTGAGGCTGCTGTCATCACTTGATACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAATAAAGGTCTTATACTATCAGTTTAACAAGGAAGAACAACTGGCTGCACTAGAAGAAGAGAAAAAGATACTAGAAGCAAGGAAGAAACTGAAAGAAGCAGGAGTGATAGGAAGCACAATGGATGCACTAGACGGAGCAGTATCGGTGGTAGGGTCTGGTGTTGGACTGGTTGGTACTGGTGTTGTGGCCGGTGCCGGTCTTGTGGGAAGTGGCGTTGTGGCCGGTGCCGGGCTAGTTGGCAGTGGCATTGGTGCTGGAGCAGGGCTAGTTGGCAGTGGTTTTGGAGCCGTTAGCAGTGGATTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGCCATAGTGGCTCTAAAAAGAGTGGCTCTTCAACTCCAGTCAGTAATGCACAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1641 0.4333 MGLFSGIFMGLVFGIALMAGWARMMRYRSAKRIAKAVLEKMLMNREHHGEMAKQETDQTLAICGRSEYACTLPFIIRVELDIKSKFCNVIGVYPRSIVEPLYGLQARDAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIIRVIFQLSEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPCDLSELELKPQGKLSVTVVKATALKNMEMIGKSDPYVVVHIRPLFKYKTKVVDNNLNPTWNERFELIAEDKETQSLILEVFDKDIGQDKRLGIVQVPLNDLDNQTEKEMELRLLSSLDTLKVKDKKDRGTLTIKVLYYQFNKEEQLAALEEEKKILEARKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGVVAGAGLVGSGIGAGAGLVGSGFGAVSSGLSKAGKFMGRTITGHSGSKKSGSSTPVSNAQENGGGAKPL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00502 546 CDD SMP_SYT 109 270 - -
Vimu9g00502 546 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 113 270 IPR039010 -
Vimu9g00502 546 Coils Coil 413 440 - -
Vimu9g00502 546 MobiDBLite consensus disorder prediction 518 546 - -
Vimu9g00502 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 284 414 IPR035892 -
Vimu9g00502 546 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 78 271 IPR031468 GO:0008289
Vimu9g00502 546 SMART C2_3c 287 384 IPR000008 -
Vimu9g00502 546 CDD C2 288 387 - -
Vimu9g00502 546 ProSiteProfiles C2 domain profile. 269 385 IPR000008 -
Vimu9g00502 546 FunFam synaptotagmin-4 isoform X1 281 439 - -
Vimu9g00502 546 Pfam C2 domain 286 383 IPR000008 -
Vimu9g00502 546 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 438 IPR045050 GO:0008289
Vimu9g00502 546 Gene3D C2 domain 281 439 IPR035892 -
Vimu9g00502 546 PRINTS C2 domain signature 303 315 IPR000008 -
Vimu9g00502 546 PRINTS C2 domain signature 328 341 IPR000008 -
Vimu9g00502 546 PRINTS C2 domain signature 350 358 IPR000008 -
Vimu9g00502 546 MobiDBLite consensus disorder prediction 520 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00502 Vimu-Chr9 5937455 5947560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00502 282 375 Lipid Metabolism Gene Families AT3G61300 32.979 3.18e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00502 - - gmx:100777838 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00502 9 5937455 5947560 Vimu9g00502 9 5937455 5947560 ECH
Vimu6g00313 6 3763074 3765326 Vimu9g00502 9 5937455 5947560 PCT