Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00472 ATGTTGATCCCTCATCCATCAATGCTAGTTGCACCACAAAGCAACAACATCGAAGTTCAACCATTGAACTTGGATGCACCTCTTACAAACCACTCCAACATACCCAGTGAGTTTGTGTGGCCTGACAATGAGAAACCATGTCTTCAGCCACCAGAACTCAAAATTCCACCCATTGACATGAAGGCCTTTCTCTCGAACGATCCACAGGCTGTGGCAAAAGTTTGTGCAGAAGTCAGTGAGGCATGCAAGAAGCATGGCTTCTTTCTTGTTGTCAACCATGGAGTTGACAAGAAGCTCCTAGAGAAAGCTCATAAGCTCATAGACACTTTCTTCTGCATGGACCTGCCAGAGAAGCAGAAGATTCAGAGAAAGTTAGGTGAACACTGTGGCTTTGCTAATAGCTTTATAGGAAGGTTCGCCTCCAAACTTCCTTGGAAGGAAACACTTTCTTTCCATTACTCTAATGATAAATCCACCAGAACTGTTGAGGACTATTTTCTCACTTCCATGGGAGAAGATTTCAAGGACTTTGGGAGTTTTTTTCAAGAGTACTGTGAAGTGATGAGCAATCTGTCTCTTGAGATCATGGAGCTTTTGGGAATGAGCCTCGGAGTAAGCAGAGAATGTTTCAGAGATTTCTTCGAAGACAATGAGTCTGTTATGAGGTTGAACTACTACCCACCATGCCAAAAACCTGAGTTAGCCTTAGGAACTGGACCTCACTGTGACCCCACTTCCCTAACCGTTCTCCACCAAGATCAAGTCGAGGGCCTCCAAGTCTTTGTCGACGGAAAATGGTGCTCTGTCGCCCCAAAAGAAGATGCGTTCGTTGTCAACATTGGCGACACATTTATGGCTCTTTCAAATGGGACATTCAAGAGTTGCTTGCATAGAGCTGTTGTGAACAACCAGATTGTGAGAAAATCTCTTGCTTTCTTCCTTTGTCCAAAACAAGACAAAGTGGTCACTCCTCCAAAGGAACTAATTACCAACGAGAATCCAAAGAAATATCCAGATTTCACATGGGCAACTCTTCTTGAATTCACACAGTTACATTACCGCCTTCTCGAAATGGTTACTAGAGAAAAACAAGTGAACAGGTGGCCCCCACCACTGTTCCATGGCCAACAACACTCTAAACTCAGCTTTAACTTGTATCTGTTTCTGTGA 1170 0.4385 MLIPHPSMLVAPQSNNIEVQPLNLDAPLTNHSNIPSEFVWPDNEKPCLQPPELKIPPIDMKAFLSNDPQAVAKVCAEVSEACKKHGFFLVVNHGVDKKLLEKAHKLIDTFFCMDLPEKQKIQRKLGEHCGFANSFIGRFASKLPWKETLSFHYSNDKSTRTVEDYFLTSMGEDFKDFGSFFQEYCEVMSNLSLEIMELLGMSLGVSRECFRDFFEDNESVMRLNYYPPCQKPELALGTGPHCDPTSLTVLHQDQVEGLQVFVDGKWCSVAPKEDAFVVNIGDTFMALSNGTFKSCLHRAVVNNQIVRKSLAFFLCPKQDKVVTPPKELITNENPKKYPDFTWATLLEFTQLHYRLLEMVTREKQVNRWPPPLFHGQQHSKLSFNLYLFL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00472 389 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 216 316 IPR005123 -
Vimu9g00472 389 FunFam Gibberellin 20 oxidase 2 25 354 - -
Vimu9g00472 389 SUPERFAMILY Clavaminate synthase-like 28 353 - -
Vimu9g00472 389 PRINTS Isopenicillin N synthase signature 276 302 - -
Vimu9g00472 389 PRINTS Isopenicillin N synthase signature 241 262 - -
Vimu9g00472 389 PRINTS Isopenicillin N synthase signature 78 95 - -
Vimu9g00472 389 Gene3D - 24 351 IPR027443 -
Vimu9g00472 389 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 55 345 - -
Vimu9g00472 389 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 158 IPR026992 -
Vimu9g00472 389 Pfam 2OG-Fe(II) oxygenase superfamily 218 316 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00472 Vimu-Chr9 5641268 5643115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00472 24 354 Glycosyltransferase AT5G59530 29.855 1.46e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00472 K05282 - gmx:100775693 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00472 9 5641268 5643115 Vimu9g00472 9 5641268 5643115 ECH