Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00460 ATGCCCCCGCCTCCTGATATAAAGCATCGTTACATAATAAAATTTGAGACTTGGAAATTGGATTTGAGTGAGAGGATAAAAATTATGGCCAGAAGAGATCTTGAGACTGGCGGTGGGAGGACCAAGAACAACAAAACAGAGGAAAACTACACTGCGGATGAGTCTTCTAATCTTTGCGAAGCTGATACCCATTGGACATCATGGCTGGTTCCTATGTTTGTGGTTGCTAATATTGTTGTTTTTGTTATTTCCATGTACATCAACAATTGTCTAAAAAATAACTTCGATCCCCAAGGTGGCTGCGTGGCTAAGTTCCTTGGAAGGTTCTCGTTTGAACCTATGCAGGAGAACTCGTTGCTTGGTCTTTCTTCTTCAACATTGACTGAGATGGGAGTCCTTTGGTGGGATAATGCTGGGAACGGGCATCAAGGATGGAGACTGGTAACTTGCATGTGTGGTCGTGTCCAATATCATGACTTCTTGAGGGTTTTAAGACTTAAGGCTTGCCCGCTATCTGCAAAGATATTTTCATTCATTGATGTGGAGAAGTGTGGGACAATTACTTTCAGACAGTTCTTGTATGGATCTGCCCATGTGATGTCCCAACCAGGGTTCCATCAAGCCTGTGAAGAAGCCTTTGCTGGGTGTGGTGGTGCAGTAAGGCCCTATATTGTAGAACAAGAGTTACGAGATTTCATTCAACCTGTTATCATCAGCTGGAATGCGGATGAGGTCAATGAACTTTTTATGTTATTTGATACCAATGATGATGGAAGAGTTGACAAGAATGATTTTGTTTCATGCCTTAGAAGAAATCCTCTTCTCATTGCATTTTTTGCACCTCAGCCAAAGCAAAAGGAATTTGAAGGTAATGGAGTGATAGAGGTAGTTTGA 894 0.4195 MPPPPDIKHRYIIKFETWKLDLSERIKIMARRDLETGGGRTKNNKTEENYTADESSNLCEADTHWTSWLVPMFVVANIVVFVISMYINNCLKNNFDPQGGCVAKFLGRFSFEPMQENSLLGLSSSTLTEMGVLWWDNAGNGHQGWRLVTCMCGRVQYHDFLRVLRLKACPLSAKIFSFIDVEKCGTITFRQFLYGSAHVMSQPGFHQACEEAFAGCGGAVRPYIVEQELRDFIQPVIISWNADEVNELFMLFDTNDDGRVDKNDFVSCLRRNPLLIAFFAPQPKQKEFEGNGVIEVV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00460 297 SUPERFAMILY EF-hand 152 279 IPR011992 -
Vimu9g00460 297 Gene3D - 142 275 - -
Vimu9g00460 297 Pfam EF-hand domain pair 240 271 IPR002048 GO:0005509
Vimu9g00460 297 PANTHER RHOMBOID-RELATED 42 151 IPR002610 GO:0004252|GO:0006508|GO:0016020
Vimu9g00460 297 ProSiteProfiles EF-hand calcium-binding domain profile. 240 275 IPR002048 GO:0005509
Vimu9g00460 297 ProSitePatterns EF-hand calcium-binding domain. 253 265 IPR018247 -
Vimu9g00460 297 SMART efh_1 244 272 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00460 Vimu-Chr9 5441634 5445755 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00460 K13510 - gmx:100818109 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00460 9 5441634 5445755 Vimu9g00460 9 5441634 5445755 ECH