Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00454 ATGTTTGTAACTGGTCATTGTCTTGGCCATCAACAATCTTTGCTGCTGCATTTGAGGAACAACCTTGTATTCAATCCGACCAAGTCCAAAAAACTGATTCACTGGAACCAAAGTGATGATTGTTGTGAATGGACTGGAGTGACATGCAGCAAAGGTCATGTTATAGCTCTTGACTTGAGCCAAGAATCCATCTCTAGAGGTATTGATCATTTAAGCAGTCTCTTCGAGTTGCAATATTTGCAGAGTTTGAATTTGGCCCACAATGATTTTCATTCTGAGATTCCTCCAGAGTTCAAAAAGCTAAAGAATTTGAGGCATTTGAATTTGTCAAATGCTGGATTTGAGGGGCAAATTCCAATTGAGATTTCTTACTTGACCAAGTTAGAAACTCTTGATTTGTCTAGCACAGTTACTTCAAAACATGGTTTAAAACTTGAGACACCAAATATTGCAATGCTTATTCAGAACTTCACAGAAATCAAAGAGTTACATCTGGATGGCGTTGCAATATCAGCCAAAGGAGAGGTGTGGAGCCATGCTTTATCTTCACTCACTAGCATGCAAGTGTTAAGTATGTCATCTTGTAATCTCTCTGGTCCTTTTGATTCTTCATTAGTAAAACTGCAATCTCTCTTAATTCTTCAGTTGAACCAGAACAATTTAGCAGGTCCAGTTCCAGAGTCTTTGGGAAGTTTGTTCAATTTGACCACCTTGCAACTCAGTGATTGTGGTTTGAATGGAGTCTTTCCAAAAACTATCTTCCAAATACCATCATTGCAGGTGCTTGATGTGTCTGATAATCCAGGTCTTCATGGCTCTCTACCAAACTTTCCAAGTCAAGGCTCTCTGTACAATTTCAACCTTAGCCACACAAATTTTTCTGGGCCTCTGCCAGAATCTATTGACAATTTGAAGCAATTGTCTAAACTAGACCTATCAAATTGCCAGTTCAGAGGAACACTTCCTTATTCAATGTCAAATCTCACCCAACTTGTACATCTAGACTTGTCATACAATAACTTTACTGGTCCTATTCCATCTTTTAATAGATCCAAGGCCCTGATAGTTTTATCCCTTAATCACAATCATTTTATGGGAACAGTTCCATCTACTCATTTTAAAGGCCTCACAAATCTCATGAGCATTGATTTAGGAGATAACTCCTTTGACGGAAGAGTCCCTTCATCTTTGTTAAGACTTCAATCTCTTCAACATCTCATGCTTTATTACAACAAATTTGATGGTGTGTTGGATGAATTTCCTAATGCATCTTTGTCATCATTAGAGATGCTTGATTTGAGTGGCAACAACTTTGAAGGGCCTATTCATATGTCTGTCTTTCAACTCAAAAGACTTCGTTTGCTTTACCTTTCCAAAAATAAGTTCAATGGCACTCTACAACTTGTTGTGATTGGGAGGCTGCAGAATTTATCTTCACTTGATCTTGCACACAATAACTTGTCAGTTGATGCAAGAATTGATGATGCATCATCCTTTCCCAGTTTGAAAACTCTATGGTTGGGTTCATGCAATTTGAGGGCATTCCCTGAATTTTTGAGAAACAAATCTTCACTGCTCTACCTAGACTTGTCTAGCAATCACATTGAAGGAACAATACCAAACTGGCTTTGGAAATTTGACAGTATGGTTATCTTGAATGTTTCTTACAACCTTTTGACAGATTTTGAAGGGCCTTTCCAAAACCTTACTTCAAATTTGTTCAAAATTGACCTTCACTCAAACAGTCTCCAAGGGCCTGCTCCTACTTTTCTGAAAAATGCCGTTTATTTGGACTACTCAAGCAATAACTTCAGCTCTATTAATTTTGTCGACATTGCTAGCAACATTCCTTTCTTGTACTTTCTCTCCCTTTCAAACAACAGTTTTCATGGAAAAATTCATGAATCCTTTTGTAACATTTCAGATCTTCGAGCACTTGATCTTTCTCATAACAGATTCAACGGCCTCATTCCAATGTGTTTGATAGGAAGTAGCAAACTCAGGCTACTAAATCTTGGTGGAAATAAACTCAATGGTTATATTTCAGATACATTCTCAACTTCATGTTCTCTAAGGTTTTTGGATCTTGGTGGGAATCTTCTAAGGGGAACCATCCCAAAATCTCTGGCTAATTGCCAAAAACTACAAGTTCTAAACCTTGGAAGCAATCAATTAACTGACAGATTTCCATGCTTCTTGAAGAGCATCGCCTCCCTCAAAGTCATGATTTTAAGGTCAAACAAATTGCATGGGAGTATTGGATGTTCTAATAACATTGGCAATTGGGAGACACTTCAAATTGTTGATTTAGCCTCCAACAATTTCAGTGGCACATTACCATCATCACTCTTATCGAGCTGGAAAAATCTGATGCTTGATGAAGATAAGGGTGGACGATTTGGCCATCTATATTTCAATCTCTATGATGACTTTAATCCTTTGAATTTCATAACTGCAATTGTAGATCTCAACAGTGAGCTACAAATAGAGTTAGCAAAAGTCATAGCATCAGAGCCAAGCCTTATAATAGACCACATAATCTCTCATGTCTTTGAGGAAGGTGTTGGTCTAAGAACATATGAGGATTCAGTTATAATTGTGAACAAAGGTAGACAGTTAAATTTAGTTAAAATCCTCACTGCCTTCACTTCCTTGGATTTCTCATCAAACAGTTTTGAAGGGCCAATACCAGAAGAGCTTATGAATCTCACTGCACTGCATGCTCTTAACCTGTCACAGAACACTTTCTCAGGTAGCATCCCTTCTTCCTTAGGCAATCTGAAGCACCTTGAGTCCTTAGACTTGTCAGTAAACTCTTTGAGTGGAGAGATTCCAACAGAGATTGCAAAGTTATCATTTCTGGCTGTCATGAATCTTTCTTACAACCATTTGGTGGGCAAAATACCCACAGGCACACAAATTCAGACATTTGAGAGTGATTCATTTGGGGGCAATGAAGGGCTATGTGGACCTCCACTAACCCAGAACTGTGATGGTGGAGGGAAAAAGTTTTCACCACCATCATCAGAAACACCTCATTCTGATGCAAAGGGTTCAATTGATTGGAATATCTTGAGTGTGGAATTGGGGTTTACTTTTGGCTTTGGAATTTACATATTCCCACTCATTTTCTTCAAGAGATGGAGAATGTGGTATTCCAAACACCTGGAAAACATCCTCTGCAAGATTGTTCCTCAGCTTGATTTTGTTTATGTGTATCGTTTGGGACAAAATTATAGAATCATGAGGTGGAACCCTTATTGA 3264 0.3827 MFVTGHCLGHQQSLLLHLRNNLVFNPTKSKKLIHWNQSDDCCEWTGVTCSKGHVIALDLSQESISRGIDHLSSLFELQYLQSLNLAHNDFHSEIPPEFKKLKNLRHLNLSNAGFEGQIPIEISYLTKLETLDLSSTVTSKHGLKLETPNIAMLIQNFTEIKELHLDGVAISAKGEVWSHALSSLTSMQVLSMSSCNLSGPFDSSLVKLQSLLILQLNQNNLAGPVPESLGSLFNLTTLQLSDCGLNGVFPKTIFQIPSLQVLDVSDNPGLHGSLPNFPSQGSLYNFNLSHTNFSGPLPESIDNLKQLSKLDLSNCQFRGTLPYSMSNLTQLVHLDLSYNNFTGPIPSFNRSKALIVLSLNHNHFMGTVPSTHFKGLTNLMSIDLGDNSFDGRVPSSLLRLQSLQHLMLYYNKFDGVLDEFPNASLSSLEMLDLSGNNFEGPIHMSVFQLKRLRLLYLSKNKFNGTLQLVVIGRLQNLSSLDLAHNNLSVDARIDDASSFPSLKTLWLGSCNLRAFPEFLRNKSSLLYLDLSSNHIEGTIPNWLWKFDSMVILNVSYNLLTDFEGPFQNLTSNLFKIDLHSNSLQGPAPTFLKNAVYLDYSSNNFSSINFVDIASNIPFLYFLSLSNNSFHGKIHESFCNISDLRALDLSHNRFNGLIPMCLIGSSKLRLLNLGGNKLNGYISDTFSTSCSLRFLDLGGNLLRGTIPKSLANCQKLQVLNLGSNQLTDRFPCFLKSIASLKVMILRSNKLHGSIGCSNNIGNWETLQIVDLASNNFSGTLPSSLLSSWKNLMLDEDKGGRFGHLYFNLYDDFNPLNFITAIVDLNSELQIELAKVIASEPSLIIDHIISHVFEEGVGLRTYEDSVIIVNKGRQLNLVKILTAFTSLDFSSNSFEGPIPEELMNLTALHALNLSQNTFSGSIPSSLGNLKHLESLDLSVNSLSGEIPTEIAKLSFLAVMNLSYNHLVGKIPTGTQIQTFESDSFGGNEGLCGPPLTQNCDGGGKKFSPPSSETPHSDAKGSIDWNILSVELGFTFGFGIYIFPLIFFKRWRMWYSKHLENILCKIVPQLDFVYVYRLGQNYRIMRWNPY 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00454 1087 SMART LRR_typ_2 640 663 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 77 100 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 425 449 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 927 951 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 474 496 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 208 232 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 499 522 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 328 350 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 101 125 IPR003591 -
Vimu9g00454 1087 SMART LRR_typ_2 400 422 IPR003591 -
Vimu9g00454 1087 Pfam Leucine Rich repeat 711 727 IPR001611 GO:0005515
Vimu9g00454 1087 Pfam Leucine Rich repeat 522 537 IPR001611 GO:0005515
Vimu9g00454 1087 FunFam Calmodulin-binding receptor kinase CaMRLK 619 731 - -
Vimu9g00454 1087 Pfam Leucine rich repeat N-terminal domain 11 50 IPR013210 -
Vimu9g00454 1087 SUPERFAMILY L domain-like 419 609 - -
Vimu9g00454 1087 SUPERFAMILY L domain-like 611 993 - -
Vimu9g00454 1087 FunFam Tyrosine-sulfated glycopeptide receptor 1 806 1001 - -
Vimu9g00454 1087 Gene3D Ribonuclease Inhibitor 175 278 IPR032675 -
Vimu9g00454 1087 Gene3D Ribonuclease Inhibitor 8 174 IPR032675 -
Vimu9g00454 1087 PRINTS Leucine-rich repeat signature 927 940 - -
Vimu9g00454 1087 PRINTS Leucine-rich repeat signature 643 656 - -
Vimu9g00454 1087 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 347 593 - -
Vimu9g00454 1087 Gene3D Ribonuclease Inhibitor 592 1003 IPR032675 -
Vimu9g00454 1087 Gene3D Ribonuclease Inhibitor 279 350 IPR032675 -
Vimu9g00454 1087 Pfam Leucine rich repeat 619 677 IPR001611 GO:0005515
Vimu9g00454 1087 Pfam Leucine rich repeat 355 412 IPR001611 GO:0005515
Vimu9g00454 1087 SUPERFAMILY RNI-like 82 481 - -
Vimu9g00454 1087 Gene3D Ribonuclease Inhibitor 351 591 IPR032675 -
Vimu9g00454 1087 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 337 998 IPR046956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00454 Vimu-Chr9 5397471 5400734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00454 7 1050 Receptor kinase-like Gene Family AT1G47890 34.331 3.31e-138 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00454 - - gmx:100805833 1829.68