Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00360 ATGTCTTCACGTTTTGTCTTTCTTCTCCTCCTTGTAGTCATCTCTGCATCACATTCAAATGCATACCCTTTATCAACGCAGAAGAGATGGATCATAGATGAAGCCACAGGACAACGTGTGAAGTTGGTGTGTGCCAATTGGGCTGGCCACCTTCAACCAATGATGCCTGAGGGTCTTGACAAAAGACCCTTGAAAGAAATTGTTGGTGAGCTTGTGAAGCACAACTTCAACTGCGTTCGTCTCACCTATGCAATCTACATGTGGACACGCTATGCTCATGAGAATGTGAGTGCCAATTTAGCCTCTTTGGATGTACCAGAAGTGGTCCAAGGCATTGCCAAGAACAACCCTTCTGTGTTGTCCATGACACACATTCAGACGTTCCATGCTGTTGTTCAAGAACTTGGAGCTCAGAATGTGAAAGTGTTGCTTGATAACCATGTGAGTGAGCCAATGTGGTGCTGCAATGATGATGATGAGAATGGCTTCTTCCATGACAGACATTTCAATCCTCAGGAATGGGTGAATGGCCTTACTTTGGCTGCCGAACACTTCAATGGAAACCCTGCTGTTGTGGCAATGAGTTTGAGGAATGAATTGCATGGCCCTCGCCAAAATTTGAAGGATTGGTACAGGTACATGAGCCAAGGAGCAGTAGCTATTCACAAGGCAAATCCAAATGTGCTTGTGCTTATCTCAGGTTTGAACTATGACACTGAGTTGCAGTTTTTAAGGAAAAGACCACTGAAGATAGACTTGGGTAAGAAAATGGTGTTTGAGACACATTTGTACTCATGGTCTGGAATTGGAACCCTCAAATTGAAAGATATATGGACAAAGCAACCATTGAATAGGATATGTGCCAACAACGTTAAAGCGATAGACTACAGAGCTGGATTCCTTACCACCGGCGAGAATGCAGCTCCTTTGATTTTTACAGAGTTTGGATTCAACGAGGAAGGTTCTTCAGTAGAAGACAACAGGTTTTTGACATGCCTTCAAACCTATCTTCTTGGAAAGGATATGGACTGGGGATTTTGGGCTTTCCAAGGTACCTACTATTTGAAGAAAGATCAGGTCCAAGTTGAGGAGTCATTTGGTGTAATGGATGCAACATGGCGTAACCTTAGATATCCAAATTTCACCGAAAAATTCCAGCTTTTGCAAAGGAAGAATCTTGAACCTAACTCCAAGGCCCCCATTGTAAATATCTTGTACCACCCACTATCTGGTCAATGTGCTCAAGTGAATGACAGGAATGAAGTTGAACTTGGAAGCTGTGAGAGCAAACACAGATGGGTTCGTGGAGAGGATGATGAGACTAAAATGCTTTTACATAGGACTGAGAAGTGCTTAACAGCAACTGGTGAAGGGCTTCCAGTTGTAGTTTCTGATTGTGAAACGAAGAACAGTTCATGGAAATCTGAATCTCTTTCTAAACTTCACTTGGCAAGTATGAATGAACAGGAGGAACAACTTTGCTTGCAGAAGGATTCTAACTCATCCACCATTGTGACTTCAAAGTGTATCTGCATAAATGATGATTCTGAATGTCTTGATGATCCTCAAAGCCAGTGGTTCCAGCTTGTTCAAACCAATGTGTAG 1605 0.4274 MSSRFVFLLLLVVISASHSNAYPLSTQKRWIIDEATGQRVKLVCANWAGHLQPMMPEGLDKRPLKEIVGELVKHNFNCVRLTYAIYMWTRYAHENVSANLASLDVPEVVQGIAKNNPSVLSMTHIQTFHAVVQELGAQNVKVLLDNHVSEPMWCCNDDDENGFFHDRHFNPQEWVNGLTLAAEHFNGNPAVVAMSLRNELHGPRQNLKDWYRYMSQGAVAIHKANPNVLVLISGLNYDTELQFLRKRPLKIDLGKKMVFETHLYSWSGIGTLKLKDIWTKQPLNRICANNVKAIDYRAGFLTTGENAAPLIFTEFGFNEEGSSVEDNRFLTCLQTYLLGKDMDWGFWAFQGTYYLKKDQVQVEESFGVMDATWRNLRYPNFTEKFQLLQRKNLEPNSKAPIVNILYHPLSGQCAQVNDRNEVELGSCESKHRWVRGEDDETKMLLHRTEKCLTATGEGLPVVVSDCETKNSSWKSESLSKLHLASMNEQEEQLCLQKDSNSSTIVTSKCICINDDSECLDDPQSQWFQLVQTNV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00360 534 Pfam Cellulase (glycosyl hydrolase family 5) 61 349 IPR001547 GO:0004553|GO:0071704
Vimu9g00360 534 SUPERFAMILY (Trans)glycosidases 21 376 IPR017853 -
Vimu9g00360 534 Gene3D Glycosidases 21 391 - -
Vimu9g00360 534 ProSiteProfiles Lectin domain of ricin B chain profile. 398 529 - -
Vimu9g00360 534 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 9 533 - -
Vimu9g00360 534 SUPERFAMILY Ricin B-like lectins 404 509 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00360 Vimu-Chr9 4326363 4328408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00360 21 531 Glycoside Hydrolase AT1G13130 39.382 2.21e-138 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00360 K01179 - qsa:O6P43_027204 635.565