Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00317 ATGTTTCTTGTCCTCTGTTTGTACTATCCAATGGAGAATGTAGATGTCAGAGAAGAATCATCAAATTGTGTCAATGAAGTAGAAGACACCAATTCTGTACTTATCTGTGGCCTTCCAGATGATATATCTCTTATGTGCCTGGCAAGAGTTCCTAGAAAATATCATGCAGTCCTGAAGTGTGTCTCAAAGAGATGGAGGGACTTAATTTGTAACGAAGAGTGGTGCACTTACCGTCGGAAGCACAAACTGGATGAAACCTGGATTTATGCTCGGTGCAGGGACAAATTAAATGAGACTTTCTGTTACGTTTTGGATCCAACCGCCTCAGTAAGAAATTGGAAGCTGGTTGATGGTATTCCACCTCACATCTCAAAAAGAAAAGGCATGGGTTTTGAAGCTTTGGGAAATAAGCTATTCTTGTTGGGTGGTTGTAGCTGGTCAATGGATTGTACTGATGAGGTGTATTCATATGATGCTTCCTCAAACTGTTGGGTTCAAGCTACTTCTATGTCAACTGCTAGGTGTTTCTTTGCTTGTGAAGTTTTGGATGAAAAACTATATGCTATCGGAGGATTAGCTTCAGATCCAACCTATTCTCATTCTTGGGATACTTTTGACCCTCTGACAAATTGTTGGAGATCTCAGAGAGATATTCCTGTTTTTTCTGATGTTGAAGATTCAGTAGTTCTTGGTGGGAAGATATACGTCCGATTTTCCAGATACCCTGTAACTCCTCATGTATTTGCCATTGTATGTGAACCATCAAGTGGCACATGGCAGTATGCAGATGCTGACATGGTTTCAGGGTGGACAGGCCCTGCAGTTGTTGTGGATGACACCCTTTATGTCTTGGATCAAACTTTAGGAACTAGGTTAATGATGTGGCACAAAGGGAGACGCCAGTGGATACAGGTTGGAAAACTATCACCACTGCTTACTAGACCACCTTGTCAGCTTGTTGCAGTTGGTAGAAGCATTTTCATTGTTGGGAAAATGCTTAGCACTGTGGTTGTTGATGTTGGTAATTTGGGGAATGAGGGCCAGGTGTTGATGAGTTCTTCCATACCAGGATTGTTAACTGATTTCACTGTAATAAGCTGTAAAAGGTTAGCAATCTGA 1119 0.4155 MFLVLCLYYPMENVDVREESSNCVNEVEDTNSVLICGLPDDISLMCLARVPRKYHAVLKCVSKRWRDLICNEEWCTYRRKHKLDETWIYARCRDKLNETFCYVLDPTASVRNWKLVDGIPPHISKRKGMGFEALGNKLFLLGGCSWSMDCTDEVYSYDASSNCWVQATSMSTARCFFACEVLDEKLYAIGGLASDPTYSHSWDTFDPLTNCWRSQRDIPVFSDVEDSVVLGGKIYVRFSRYPVTPHVFAIVCEPSSGTWQYADADMVSGWTGPAVVVDDTLYVLDQTLGTRLMMWHKGRRQWIQVGKLSPLLTRPPCQLVAVGRSIFIVGKMLSTVVVDVGNLGNEGQVLMSSSIPGLLTDFTVISCKRLAI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00317 372 SMART kelc_smart 185 231 IPR006652 GO:0005515
Vimu9g00317 372 SMART kelc_smart 137 184 IPR006652 GO:0005515
Vimu9g00317 372 Pfam F-box domain 36 71 IPR001810 GO:0005515
Vimu9g00317 372 SUPERFAMILY F-box domain 35 81 IPR036047 GO:0005515
Vimu9g00317 372 SUPERFAMILY Kelch motif 99 333 IPR015915 GO:0005515
Vimu9g00317 372 Gene3D - 83 348 IPR015915 GO:0005515
Vimu9g00317 372 SMART fbox_2 38 78 IPR001810 GO:0005515
Vimu9g00317 372 CDD F-box_AtAFR-like 34 78 - -
Vimu9g00317 372 PANTHER OS02G0202900 PROTEIN 26 342 IPR045887 -
Vimu9g00317 372 Pfam Kelch motif 173 214 IPR006652 GO:0005515
Vimu9g00317 372 Pfam Kelch motif 126 171 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00317 Vimu-Chr9 3823840 3825610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00317 38 313 Miscellaneous Gene Families AT4G33900 25.084 3.09e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00317 - - pvu:PHAVU_010G098100g 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00317 9 3823840 3825610 Vimu9g00317 9 3823840 3825610 ECH