Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00288 ATGCGTGTGCATGCGTGTAGGTTTTATGCTGCGGACGTGAGAAAGGAGAGCTTCGAGATGTTCGACCGCTGCAAGAGGAAGGTCGTGGTGACGGCGAATCCAACAGTGATGGTGGAGCCGTTCGTGAAGGACTTTCTTGGTGGAGACAAGGTGCTGGGAACGGAGATCGAAGTGAATCCGAAGACGAAGAAGGCTACCGGATTCGTGAAGAAGCCTGGCGTGCTCGTCGGAAAGTGGAAGCGTCTAGCCGTTGCAAAAGAGTTCGGCGAGGAGTCGCCGGACATTGGACTCGGAGATCGTAAGACTGACTTCGATTTCATGTCTATTTGCAAGGAGGGTTACATGGTGCCTCCGAGCAAATCAGCAAAACCAGTCCCACAGGAGCGACTGAAGAGCAGGATAATCTTCCACGACGGTCGTTTCGTGCAGAAGCCAGACCCACTCAACGCTCTCATCACCTTCCTATGGCTGCCCTTTGGTTTTATCCTCTCCATTATACGGGTCTACTTCAACCTTCCCCTCCCTGAACGCATCGTGCGCTACACCTACGAAATGCTCGGCATCAAGCTCGTCATCCGCGGCCACCGGCCTCCACCACCGTCTCCTGGCACCCCCGGCAACCTCTACGTCTGCAACCACCGCACCGCCCTTGACCCCATCGTCATCGCTATCGCCCTCGGCCGCAAGGTCTCCTGCGTCACCTACAGCGTCAGCAAGCTCTCTCGCTTCCTTTCGCCCATCCCCGCCGTCGCCCTCACTCGCGACCGCGCTGCCGACGCCGCCCGCATCACCGAGATCCTCCAGAAGGGTGACCTGGTCGTCTGCCCCGAAGGAACGACTTGTCGCGAGCCCTTTTTGCTTCGGTTCAGCGCCCTCTTCGCGGAACTGAGCGACAGAATCGTTCCCGTGGCTGTGGACTGCAAGCAGAACATGTTCTTTGGAACCACTGTTCGTGGTATAAAATTTTGGGACCCTTACTTCTTCTTCATGAACCCTAGGCCAGTTTACGAGGTTACCTTCCTGGAGCCGTTGCCGGAGGAGATGTCGTGCAAGGCAGGGGGAAAGAGCTCAATTGAGGTGGCGAATCATGTGCAGAAGGTGTTGGGGGATGTGTTAGGGTTCGAGTGCACGGGGTTGACTAGGAAGGATAAGTATATGCTTTTGGGTGGGAATGATGGGAAGGTGGAGTCTCTTTATGGTTCCAAGAAGTAA 1212 0.5586 MRVHACRFYAADVRKESFEMFDRCKRKVVVTANPTVMVEPFVKDFLGGDKVLGTEIEVNPKTKKATGFVKKPGVLVGKWKRLAVAKEFGEESPDIGLGDRKTDFDFMSICKEGYMVPPSKSAKPVPQERLKSRIIFHDGRFVQKPDPLNALITFLWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGIKLVIRGHRPPPPSPGTPGNLYVCNHRTALDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAVALTRDRAADAARITEILQKGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAVDCKQNMFFGTTVRGIKFWDPYFFFMNPRPVYEVTFLEPLPEEMSCKAGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVESLYGSKK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00288 403 SMART plsc_2 207 308 IPR002123 GO:0016746
Vimu9g00288 403 Gene3D - 6 132 IPR023214 -
Vimu9g00288 403 CDD LPLAT 183 344 - -
Vimu9g00288 403 FunFam Glycerol-3-phosphate 2-O-acyltransferase 6 9 128 - -
Vimu9g00288 403 Pfam haloacid dehalogenase-like hydrolase 6 107 - -
Vimu9g00288 403 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 122 393 - -
Vimu9g00288 403 PANTHER ANCIENT UBIQUITOUS PROTEIN 6 397 - -
Vimu9g00288 403 Pfam Acyltransferase 206 296 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00288 Vimu-Chr9 3523471 3527180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00288 7 403 Acyl Lipid Metabolism Gene Families AT4G00400 79.849 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00288 K13508 - gmx:100794137 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00288 9 3523471 3527180 Vimu9g00288 9 3523471 3527180 ECH