Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00254 ATGGGTAGTAAAACTCTGCTCAAGTGGCCAAAGCAAATCACAAATTCCCTAGTTGTGCAGTTAATTAAAGCAGAAAAGGATGTGCACAAAGCTGTTACTATATTCGATTCTGCAACTGCTGAATATAGTAATGGGTTTCGTCATGATCATGAAACTTTTAGTCTCATAATCTCCAGGTTAGTAGCAGTGAATCAGTTTAGGACAGCAGAAGGGATGCTGGAAAGAATGAAGCAAGAAGATTGTAAGGTTACAGAGGACATACTTTTAACTATATCCAGGGGTTTTGGACGTGTGCATAGGCCACTTGATGCCATCAGAGTTTTCCACAAGATGGAAGATTTTCAGCTTAGACCCACTCAAAAGGCTTACCTTACAATAGTAGATATTCTTGTGGAGGAAAACCATGTAAAAAGGGCTATTCGTTTTTATAGGGAGATGAGAGAACTGGGCTTTCCACCTACTGTTGTTTCCCTCAATATTTTGATCAAGGCCCTCTGCAAAAACAAGGAGAGTGTTGATTCTGCCTTACTGATATTTCAGGAAATGTCTAACCATGGGTGCCAACCTGATTCATATACATATGGTACATTGATTAATGGGATGTGTAGACTTGGAAATATCAGTGAAGCAAAGGAACTATTCAAAGAGATGAAGCAAAAAGGTTTTTCAGCTTCTGTTGTTACTTATACTAGTTTGATACATGGCTTGTGTCAGTCTAATAATTTAGATGAAGCTATTGAATTGCTTGAAGAAATGAAAAGAAATGACATTGAGCCAAATGTTTTTACTTATAGTTCTCTTATAGATGGTTTGTGCAAAGCTGGTCATTCATCACAAGCAATGGGATTATTGGAAGTGATGGTCAGAAAGAACCATTTACCCAACATGGTTACTTATAGTTCTTTAATCAGTGGACTGTGTAAAGAAGGAAAGCTTTGTGAATCTGTGGAGATTCTTGATAGGATGAGGATTCAAGGCTTGAAACCAAGTGCAGGGTTGTATGGAAAAGTCATAAGTGGCCTCTGTGCTGCAGGCAGCTTTCAAGAAGCTGCAAACTTCATTGATGAGATGGTGCTAGGTGGTATTTCGCCAAATCGAGCAACTTGGAGCCTTCATGTTAGGATGCATAACATGGTAGTCCAGGGTCTTTGTAATAATGTTGATCCACCTCGTGCATTTCAGTTGTATCTGAGTTTGCGAACTAGAGGCATATCTGTTGAAGTTGGCACTTTTGATTGTCTAGTCAAATGTTTTTGTAAGAGAGGAGACCTCCATAAAGCTGCTCGGATTCTTGATGAGATGGTGTTAGATGGATGCATTCCAGACCAACAAATATGGAATGTTGTAATTGGTGGACTTTGGGACCGAAAAAAAGTGAGAGAAGCCACTGAGCTGTTGCTGGTTGAGCTGAGGCAGAAGTTTGTTGAAGCTGAAAGTTGA 1440 0.3958 MGSKTLLKWPKQITNSLVVQLIKAEKDVHKAVTIFDSATAEYSNGFRHDHETFSLIISRLVAVNQFRTAEGMLERMKQEDCKVTEDILLTISRGFGRVHRPLDAIRVFHKMEDFQLRPTQKAYLTIVDILVEENHVKRAIRFYREMRELGFPPTVVSLNILIKALCKNKESVDSALLIFQEMSNHGCQPDSYTYGTLINGMCRLGNISEAKELFKEMKQKGFSASVVTYTSLIHGLCQSNNLDEAIELLEEMKRNDIEPNVFTYSSLIDGLCKAGHSSQAMGLLEVMVRKNHLPNMVTYSSLISGLCKEGKLCESVEILDRMRIQGLKPSAGLYGKVISGLCAAGSFQEAANFIDEMVLGGISPNRATWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSLRTRGISVEVGTFDCLVKCFCKRGDLHKAARILDEMVLDGCIPDQQIWNVVIGGLWDRKKVREATELLLVELRQKFVEAES 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 189 IPR002885 -
Vimu9g00254 479 Pfam PPR repeat family 153 203 IPR002885 -
Vimu9g00254 479 Pfam PPR repeat family 225 273 IPR002885 -
Vimu9g00254 479 Gene3D Tetratricopeptide repeat domain 170 289 IPR011990 GO:0005515
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vimu9g00254 479 Gene3D Tetratricopeptide repeat domain 290 362 IPR011990 GO:0005515
Vimu9g00254 479 Gene3D Tetratricopeptide repeat domain 114 169 IPR011990 GO:0005515
Vimu9g00254 479 Gene3D Tetratricopeptide repeat domain 3 113 IPR011990 GO:0005515
Vimu9g00254 479 Coils Coil 460 479 - -
Vimu9g00254 479 Gene3D Tetratricopeptide repeat domain 370 478 IPR011990 GO:0005515
Vimu9g00254 479 FunFam Pentatricopeptide repeat-containing protein At5g39710 173 279 - -
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vimu9g00254 479 Pfam PPR repeat 290 323 IPR002885 -
Vimu9g00254 479 Pfam PPR repeat 402 435 IPR002885 -
Vimu9g00254 479 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 15 291 - -
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Vimu9g00254 479 Pfam PPR repeat 123 151 IPR002885 -
Vimu9g00254 479 Pfam PPR repeat 52 81 IPR002885 -
Vimu9g00254 479 Pfam PPR repeat 334 361 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 156 191 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 122 154 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 410 442 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 334 365 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 297 330 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 262 295 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 227 261 IPR002885 -
Vimu9g00254 479 NCBIfam pentatricopeptide repeat 192 225 IPR002885 -
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vimu9g00254 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vimu9g00254 479 SUPERFAMILY HCP-like 121 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00254 Vimu-Chr9 3076216 3077655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00254 45 466 Glycosyltransferase AT1G05670 29.858 1.17e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00254 - - gmx:100794116 862.448