Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00241 ATGCACTATATATACCCCAAACTCACACCATTTTTTCACCACCACTTCTTTGCTAACCTCCGAAGCCTTGCACCTCAAACTAGAGTCTTATCGTACACCTTCTGCACAAATTATAACATTAACATGGACTCGGGGAAAATGAGCCAACACCTTCTATCCAAAATTGCCACCAATGACAAACATGGAGAGAATTCTCCATACTTTGATGGCTGGAAAGCATATGAGAGAAACCCTTTTCACCCTACAAAAAATCCTCAAGGTGTTATTCAGATGGGTCTTGCAGAAAATCAACTATGCTTTGATCTGATTGAAGACTGGATTCTGAATCATCCCGAAGCTTCCATTTGCACTCCTGAGGGAGTGCATCAGTTCAGAAACATTGCCAACTTTCAAGACTATCATGGACTGCAACAGTTCAGAAATGCTATTGCAAACTGGATGTCAAAAGTGAGAGGAGGTAGGGTCAGATTTGATCCAGACCGTATATTGATGAGTGGAGGAGCAACAGGGGCGAACGAGCAAATCATGTTCTGCTTGGCTGATCCTGGAGATGCCTTTATGATTCCTACCCCATTTTATCCAGGATTCGTTCGTGACTTGTGTTGGAGAACCCAGGTGCAGTTGATTCCTGTCCACTGCCATAGCTCCAACGACTTCAAGATAACAAGAGAAGCTCTTGAAGAAGCTTACAAAAAAGCCAAAGAGGACAACATCAACGTTAAGGGGTTGATCATAACAAACCCCTCTAACCCTTTGGGGACAACCTTGGACAGGGACACGTTGAAGAGCCTAGTGAGCTTCATCAACGAGAAAAACATTCACTTAGTCTGTGATGAAATCTACGCAGCAACAGTGTTCAGTAGTTCCCCCAGTTATGTAAGCGTGGCTGAAGTGATTCAAGAAATGGAACATTGCAAACGTGAACTGATTCATGTCATTTATAGTTTGTCCAAAGACATGGGGTTCCCTGGTTTCAGAGTTGGCATAGTTTATTCATTCAACGATGAAGTGGTGGCATGTGCTAGGAAAATGTCTAGCTTCGGCTTAGTCTCCTCGCAAACTCAACACATGCTGGCTTCCATGCTTTCCGATGAAAAGTTTGTGACGAAGTTTCTTTCGGAGAATTCAAGAAGGTTGGAGGAAAGGCACGAGAAGTTCATGAAGGGGCTGGAAGAGGTTAACATTGTTCGGTTTCCAAGCAGTGCAGGACTTTTCTTCTGGATGAACTTGAAGAGTTTATTGGAGGAAGCAACTTTTGAAGCTGAGCTGAAGCTATGGCGTGTGATCATTCACGAGGTGAAGCTGAATGTGTCACCAGGGTCTTCTTTCAACTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCCAACATGGATGATGAAACAGTGGAGATTGCACTCAACAGGATTCGGGAACTGGTCGGGAAAGAAACAAAGAAACCAGTGGGAATGAAACGTTGGCAATCGAATCTTAGACTCAGTTTTTCTTCGAGGCGGTTTGATGAGAGTGCTATGTCTCCTCATTCACCTATTACATCACCTCTTGTTCGAGCCACTTGA 1560 0.4391 MHYIYPKLTPFFHHHFFANLRSLAPQTRVLSYTFCTNYNINMDSGKMSQHLLSKIATNDKHGENSPYFDGWKAYERNPFHPTKNPQGVIQMGLAENQLCFDLIEDWILNHPEASICTPEGVHQFRNIANFQDYHGLQQFRNAIANWMSKVRGGRVRFDPDRILMSGGATGANEQIMFCLADPGDAFMIPTPFYPGFVRDLCWRTQVQLIPVHCHSSNDFKITREALEEAYKKAKEDNINVKGLIITNPSNPLGTTLDRDTLKSLVSFINEKNIHLVCDEIYAATVFSSSPSYVSVAEVIQEMEHCKRELIHVIYSLSKDMGFPGFRVGIVYSFNDEVVACARKMSSFGLVSSQTQHMLASMLSDEKFVTKFLSENSRRLEERHEKFMKGLEEVNIVRFPSSAGLFFWMNLKSLLEEATFEAELKLWRVIIHEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVEIALNRIRELVGKETKKPVGMKRWQSNLRLSFSSRRFDESAMSPHSPITSPLVRAT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00241 519 Gene3D Aspartate Aminotransferase, domain 1 77 469 IPR015422 GO:0003824
Vimu9g00241 519 SUPERFAMILY PLP-dependent transferases 57 475 IPR015424 -
Vimu9g00241 519 Gene3D - 111 364 IPR015421 GO:0003824
Vimu9g00241 519 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 50 474 - -
Vimu9g00241 519 CDD AAT_like 129 472 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 183 204 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 237 261 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 91 117 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 309 333 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 124 140 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 273 296 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 341 364 - -
Vimu9g00241 519 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 161 181 - -
Vimu9g00241 519 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 315 328 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vimu9g00241 519 Pfam Aminotransferase class I and II 89 470 IPR004839 GO:0009058|GO:0030170
Vimu9g00241 519 Coils Coil 216 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00241 Vimu-Chr9 2897487 2901219 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00241 K20772 - gmx:100813347 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00241 9 2897487 2901219 Vimu9g00241 9 2897487 2901219 ECH
Vimu6g00588 6 7067958 7071422 Vimu9g00241 9 2897487 2901219 PCT