Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00187 ATGGCCGATCGGTCATACCCGGAAGACCCTGAGGTAGCCGACCGACCGGGATTGGAGGAGAAGGCTAGAGACGGACGGACGACGAAAGAGCGGAAACGCATGAAGGATTCAAATTCGGATCTGTTTGACCCGGTTGTGGCCATGGAGTCCGAGTGGTCCCGCGGCGGTTCAACTTCCGACGCCGATTTCGCCTTCGCCTTCAACGACAGTAACTTCTCCGACAGGGTTCTCCGGATCGAGATCATGCCTGACCCCGTCGACGCCCGACCCGATTCTGACGGCTGCACCACCATTGCCGACTGGGCGCGCCACCGCAAGCGCCGCCGCGAGGATATAAAAAAGGATAACGGAGCGGATATTGCTTCGGTGCCAGATGAGCAAATTTTGAACGGGAATCAGCCTGATTTGGATGAGTGTGAAAACCAAGATGAGGATGCTGTTGCAATGGTTGAGGAACCCAATTCTGGTGATGAAGCTACTAACAGTATTGATTCAGACTGGAGCATGGACTGCTCTGCAGGAGCAGTTGTAAGAGTTAAAACGCTGCATATAAGTTCTCCTATTCTGGCTGCAAAAAGTCCTTTCTTCTATAAGCTTTTCTCAAATGGGATGAGGGAGTCTGAGCAGAGACATGTCACCCTCAGAATTAATACCTCTGAAGAAGCTGCTCTCATGGAGCTACTGAATTTTATGTACAGTAACACCTTGACTACTACTGCAGCACCTGCTTTACTGGATGTGTTGATGGCTGCTGATAAATTTGAAGTTGCTTCATGCATGAGATGCTGTAGCCGGTTGTTGCGGAATATGCCTATGACACCTGACTCTGCATTGCTTTATTTGGAGCTTCCTTCTAGTGTCTTAATGGCTGATGCAGTCCAACCATTGACTGATGCTGCAAAGCAGTACCTGGCTGGTCGGTACAAGGATATAACCAAGTTCCAGGAAGAAGTTTTGGCATTGCCCCTTGCTGGAGTAGAGGCAATACTGTCTAGCGATGATCTCCAGGTTGCCTCGGAGGATGCTGTATATGATTTTGTGTTGAAGTGGTCACGACAGCAGTACCCTAAACTGGAAGAAAGGCGAGAAGTCCTGGGTTCCCGTCTAGCTCGTTTAATTCGCTTCCCTTACATGACCTGTCGAAAGCTTAAGAAGGTCTTAACCTGTACTGACTTTGACCATGATGTTGCTTCTAAGCTTGTACTGGAGGGCCTATTTTTCAAGGCTGAGGCTCCACACCGCCAGCGGGCACTGGCAGCAGAAGACTCTGCTTCTTCAAACCGTCGATTTGTGGAGAGGGCATACAAGTATCGGCCAGTGAAGGTGGTTGAATTTGAACTTCCCCGGCAGCAGTGTGTGGTGTACTTGGATCTGAAGAGGGAGGAGTGTGCCAATCTATTCCCATCTGGGCGGGTATACTCTCAGGCATTCCATTTGGGTGGTCAAGGTTTTTTCCTATCAGCACATTGTAACATGGATCAACAAAGCTCTTTCCATTGCTTTGGGCTGTTTTTGGGAATGCAGGAGAAGGGGTCAGTGAGCTTTGCTGTTGACTATGAGTTTGCTGCAAGGTCGAGGCCAACAGAGGAATTTGTTAGCAAATACAAAGGCAACTATGTGTTCACAGGGGGAAAGGCCGTTGGGTATAGAAACTTGTTTGCTATTCCATGGACATCGTTTATGGCTGAGGATAGTCTTTACTTCATCAACGGTGTCCTCCACCTTAGAGCTGAACTCACCATCAGACACTGA 1752 0.4914 MADRSYPEDPEVADRPGLEEKARDGRTTKERKRMKDSNSDLFDPVVAMESEWSRGGSTSDADFAFAFNDSNFSDRVLRIEIMPDPVDARPDSDGCTTIADWARHRKRRREDIKKDNGADIASVPDEQILNGNQPDLDECENQDEDAVAMVEEPNSGDEATNSIDSDWSMDCSAGAVVRVKTLHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINTSEEAALMELLNFMYSNTLTTTAAPALLDVLMAADKFEVASCMRCCSRLLRNMPMTPDSALLYLELPSSVLMADAVQPLTDAAKQYLAGRYKDITKFQEEVLALPLAGVEAILSSDDLQVASEDAVYDFVLKWSRQQYPKLEERREVLGSRLARLIRFPYMTCRKLKKVLTCTDFDHDVASKLVLEGLFFKAEAPHRQRALAAEDSASSNRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSRPTEEFVSKYKGNYVFTGGKAVGYRNLFAIPWTSFMAEDSLYFINGVLHLRAELTIRH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00187 583 FunFam BTB/POZ domain-containing protein POB1 162 292 - -
Vimu9g00187 583 Pfam BTB/POZ domain 180 268 IPR000210 GO:0005515
Vimu9g00187 583 Gene3D - 303 408 - -
Vimu9g00187 583 Gene3D Potassium Channel Kv1.1; Chain A 161 294 IPR011333 -
Vimu9g00187 583 PANTHER OS02G0260700 PROTEIN 49 582 IPR045890 -
Vimu9g00187 583 MobiDBLite consensus disorder prediction 1 39 - -
Vimu9g00187 583 SMART BTB_4 144 271 IPR000210 GO:0005515
Vimu9g00187 583 SUPERFAMILY POZ domain 180 268 IPR011333 -
Vimu9g00187 583 SUPERFAMILY TRAF domain-like 470 581 - -
Vimu9g00187 583 MobiDBLite consensus disorder prediction 1 43 - -
Vimu9g00187 583 ProSiteProfiles BTB domain profile. 171 240 IPR000210 GO:0005515
Vimu9g00187 583 SMART BACK_2 286 388 IPR011705 -
Vimu9g00187 583 Pfam BTB And C-terminal Kelch 294 386 IPR011705 -
Vimu9g00187 583 CDD BTB_POZ_ZBTB_KLHL-like 176 254 - -
Vimu9g00187 583 FunFam BTB/POZ domain-containing protein POB1 305 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00187 Vimu-Chr9 2323369 2330752 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00187 - - gmx:100776595 1030.39