Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00162 ATGCCTCCTTTGACCTCGTGGCTGCTACTCGCTATTCTCGCGCTGACAGCGCTGGCGATGCCTCCAGCACGCGCCGCGCCGGTTGCGTCGTTCGACGATCAGCGAGAGTTTGACTATTTCATGTTGGCCTTGCAATGGCCCGGCACTTACTGCCAGCGCACGAGCAGTTGCTGTCCCACCAACGGTTGCTGCAGAGGCTCCGATTCTCCAAAAATATTCACCATACATGGACTCTGGCCTGACTACAATGATGGATCCTGGCCATCCTGTTGTTCTGGAGCCAGTTTCAATCAGAATGAGATATCGACTTTGACTAATGCTTTAGAGCAATATTGGCCATCATTGAGCTGTAGCAATCCATCATTATGCCATGGTGGGAAAGGAACATTTTGGGCTCATGAGGTGGTTGTTGGAATTAGTTAG 423 0.513 MPPLTSWLLLAILALTALAMPPARAAPVASFDDQREFDYFMLALQWPGTYCQRTSSCCPTNGCCRGSDSPKIFTIHGLWPDYNDGSWPSCCSGASFNQNEISTLTNALEQYWPSLSCSNPSLCHGGKGTFWAHEVVVGIS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00162 140 SUPERFAMILY Ribonuclease Rh-like 36 134 IPR036430 GO:0003723|GO:0033897
Vimu9g00162 140 Pfam Ribonuclease T2 family 37 134 IPR001568 GO:0003723|GO:0033897
Vimu9g00162 140 Gene3D - 33 136 IPR036430 GO:0003723|GO:0033897
Vimu9g00162 140 PANTHER RIBONUCLEASE T2 27 134 IPR001568 GO:0003723|GO:0033897
Vimu9g00162 140 ProSitePatterns Ribonuclease T2 family histidine active site 1. 73 80 IPR018188 GO:0003723|GO:0033897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00162 Vimu-Chr9 1888460 1890543 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00162 K01166 - gmx:100789614 240.35