Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu9g00156 | ATGCCGACGGGGCTACCGGCGGCGATCACCGTCGTCGCGAGCGACGATGAGGGCTGGGTGTGGGCTCAGATCAAGGCGGAGGCGCGCCGCGACGCCGAGTCGGAGCCGGCGCTGGCGAGCTACCTGTACTCGACGATCCTCTCGCACTCCTCGCTCGAACGTTCTCTCTCGTTCCACCTGGGTAACAAGCTCTGTTCTTCTACGCTACTATCCACTCTCCTCTACGACCTCTTCCTCAACGCCTTCTCCTCCGACCCCTCCCTCATTTCCGCCGCCGTCGCGGACCTCCGCGCCGCGCGCGAACGGGACCCTGCCTGCGTTTCCTACTCTCACTGTCTTCTCAATTACAAAGGCTTCCTCGCCTGCCAGGCGCACCGTGTGGCACACCTGTTATGGCGGCAATCGCGGCGGCCGTTGGCATTGGCACTGCACTCTCGGATTGCTGATGTGTTTGCGGTGGATATTCACCCGGCGGCGAGGATTGGGAAGGGGATTCTGTTTGATCATGCCACTGGGGTGGTGGTGGGGGAGACAGCGGTGATTGGGAACAATGTATCCATTCTGCACCATGTTACACTGGGCGGGACTGGCAAGGTTGGTGGTGACAGGCATCCCAAGATTGGGGATGGGGTGCTTATTGGCGCTGGTGCTACAATTCTGGGAAATATTAAGATTGGGGAAGGTGCAAAGGTTGGTGCCGGCTCGGTGGTTTTGATTGATGTGCCGCCAAGGACCACCGCGGTTGGGAACCCGGCGAGGTTGGTTGGTGGGAAGGAGACACCCTCTAAGCATGAGGATGTGCCTGGGGAGTCCATGGACCATACTTCCTTTATCTCTGAGTGGTCAGATTATATCATTTGA | 861 | 0.5912 | MPTGLPAAITVVASDDEGWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLISAAVADLRAARERDPACVSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIADVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARLVGGKETPSKHEDVPGESMDHTSFISEWSDYII | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu9g00156 | 286 | FunFam | Serine acetyltransferase | 154 | 279 | - | - | |
| Vimu9g00156 | 286 | SUPERFAMILY | Trimeric LpxA-like enzymes | 19 | 256 | IPR011004 | - | |
| Vimu9g00156 | 286 | FunFam | Serine acetyltransferase 5 | 5 | 153 | - | - | |
| Vimu9g00156 | 286 | CDD | LbH_SAT | 151 | 251 | IPR045304 | - | |
| Vimu9g00156 | 286 | ProSitePatterns | Hexapeptide-repeat containing-transferases signature. | 213 | 241 | IPR018357 | GO:0016740 | |
| Vimu9g00156 | 286 | Pfam | Hexapeptide repeat of succinyl-transferase | 171 | 187 | IPR001451 | - | |
| Vimu9g00156 | 286 | NCBIfam | serine O-acetyltransferase | 94 | 253 | IPR005881 | GO:0005737|GO:0006535|GO:0009001 | |
| Vimu9g00156 | 286 | Pfam | Bacterial transferase hexapeptide (six repeats) | 204 | 237 | IPR001451 | - | |
| Vimu9g00156 | 286 | Gene3D | Hexapeptide repeat proteins | 154 | 274 | - | - | |
| Vimu9g00156 | 286 | PANTHER | SERINE ACETYLTRANSFERASE | 14 | 286 | - | - | |
| Vimu9g00156 | 286 | SMART | SATase_N_2_a | 20 | 124 | IPR010493 | GO:0005737|GO:0006535|GO:0009001 | |
| Vimu9g00156 | 286 | Gene3D | serine acetyltransferase, domain 1 | 1 | 153 | IPR042122 | - | |
| Vimu9g00156 | 286 | Pfam | Serine acetyltransferase, N-terminal | 20 | 124 | IPR010493 | GO:0005737|GO:0006535|GO:0009001 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu9g00156 | Vimu-Chr9 | 1859918 | 1861245 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu9g00156 | 20 | 274 | Miscellaneous Gene Families | AT2G17640 | 56.863 | 9.68e-91 | 270 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu9g00156 | K00640 | - | gmx:547632 | 548.895 |