Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00145 ATGTGGAAGTTGCTGCACCTCAACCAACCCTTCCACCCCACATCAGCCTCCGCCACCAATCCCCTTGCCGTCGCCGTTACCGCCGCTTCCTTCGCCATCCTCCTCCTCACCCTCTCTGCCCTTCTTTACTGTCTCCGCAGACGCAAAACCTTCTCTACTGACCCCACAGTCAACCTCTTTCACTGCGATGACGCCGCCGCCTGTCGGAAAGCGAGGAACAACATGGACTCGCCGGAGCTCCAGCCCCTGCTCGCGGGAAAAGCCTCGGTGGCGGCGGTGGACGACGAAGAACAGCAACTCTGCTCGCCGAGAGGGAAGATTACAGAATCTGAACTTGTATGTGAACCAGAGGAATCAAATTGTGAAGGTGATGATGATGCTGGAGTATCTGATAATGAGGCTGAAACAGATCTTTTACTACATTTTCTAATTTCACTCAGAGAAGAAAAGAAGAAACAGGCAGCCAAGTTGGAAGAAGTTCTGAATTTCTTGAATGAAGATATTAAGGAGGTTGAAAGAAGCTTCTCACTTGGGACAGATTCAGTATTTCCTTTGGCACCAATGAAAAATCCTGAAGTGAGAGGAAATGATGCACACTCTCAAGATTCTTCGAATTCAGACATTAGTAGAATGATTCGAAGGTCATTTGTGGATGAAGAAAGATTAATGAGTAATATAAATGAGCTAGAGAATTCATACTTTGCCGCAAGATCCGAAGTTCTGCCGAAAGAGGCTTCATCTGTTTCAAGCAATGTGATGGAAAGTGAACGGAGGCATGTAGAGAATGTTGATAAGGAACCAAGAAGAATTCAGAGTTCTGTTGCTTGTTTAGAATCCTTCTGTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCAGATTAGGAAATAGTTCTGGAAATATAATGTGTGGTTTAAGTTTTGACCGTGATGAAGATTACATTGCAGCAGGAGGAATTTCAAGGAAAATCAAGATTTTTGAGCTCAGTAGTGCTATTTCAGGTGATTCTGATGACATCCAGTACCCAGTAGTTGAGATGTCAAATGAATCAAAGATTAGTAGTGTGTGCTGGAACACTTGCATACAAAATCATCTGGCATCTGCTGACTATGATGGTGAGATTATGATGTGGGATGCAGGCACTGGTCAGATTCTATCTCAATACATAGAGCACGAAGAAAGAGCTTGGTCTGTTCACATTTCTCCGTCTGACCCAAAAATGTTTGCCAGTGGAAGTGATGACTGTTATGTCAAAGTTTGGAATATCAACGAGAAAAATTCTGTGGAAACTATCAGTATGGATGCCAATATATGCTGTGTTCAGTTCTCTCCTCCATCAACAAATCTTTTATTTTTTGGGTCATCTGATCACAAGGTTTATGGTTATGATCTTCGTCACTCTAGAATCCCTTGGTGCTCATTAGCTGGTCATAGGAATTCTGTGAGCTATGTAAAGTTTACAGATGCTGGAGCGGTTGTCACAGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAGCCAGTTCTTCTGCTTTGTCTTCTGATGCTTGTGTCTTAACCTTTCAAGGACATAGAAATGAAAAGAATTTCGTGGGATTATCTGTTTCGGGTGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCACTTCAAGTGCCATTTGCTACTCATGAATTTGAGCCAATTGATCCCATTTCTGGTGATCCAGATAATAGACAGTTTGTTTCTAGTGTTTGCTGGGGAAAGAAGTCTAACATGCTTGCAGCCGCCAACTCAGTTGGAATTATTAAACTATTGCAGATGCACCCTCCAAATGCAAAGCAGAAGTTTTTCCTTCAGAAACTTCGCATCAATGGCATCCGTAATTCACAAATCAACAATCTAGGGCCACCAAACAGACCTGAAAGTTTGATTGAACTTGAATCTTAG 1968 0.4268 MWKLLHLNQPFHPTSASATNPLAVAVTAASFAILLLTLSALLYCLRRRKTFSTDPTVNLFHCDDAAACRKARNNMDSPELQPLLAGKASVAAVDDEEQQLCSPRGKITESELVCEPEESNCEGDDDAGVSDNEAETDLLLHFLISLREEKKKQAAKLEEVLNFLNEDIKEVERSFSLGTDSVFPLAPMKNPEVRGNDAHSQDSSNSDISRMIRRSFVDEERLMSNINELENSYFAARSEVLPKEASSVSSNVMESERRHVENVDKEPRRIQSSVACLESFCEGLCKFARYSKFEECGRLGNSSGNIMCGLSFDRDEDYIAAGGISRKIKIFELSSAISGDSDDIQYPVVEMSNESKISSVCWNTCIQNHLASADYDGEIMMWDAGTGQILSQYIEHEERAWSVHISPSDPKMFASGSDDCYVKVWNINEKNSVETISMDANICCVQFSPPSTNLLFFGSSDHKVYGYDLRHSRIPWCSLAGHRNSVSYVKFTDAGAVVTASTDNSLKLWDLKKASSSALSSDACVLTFQGHRNEKNFVGLSVSGGYIACGSESNEVYCYHKSLQVPFATHEFEPIDPISGDPDNRQFVSSVCWGKKSNMLAAANSVGIIKLLQMHPPNAKQKFFLQKLRINGIRNSQINNLGPPNRPESLIELES 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00145 655 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 392 IPR001680 GO:0005515
Vimu9g00145 655 SMART WD40_4 472 510 IPR001680 GO:0005515
Vimu9g00145 655 SMART WD40_4 292 332 IPR001680 GO:0005515
Vimu9g00145 655 SMART WD40_4 429 468 IPR001680 GO:0005515
Vimu9g00145 655 SMART WD40_4 386 426 IPR001680 GO:0005515
Vimu9g00145 655 SMART WD40_4 571 613 IPR001680 GO:0005515
Vimu9g00145 655 SMART WD40_4 344 383 IPR001680 GO:0005515
Vimu9g00145 655 SMART WD40_4 521 560 IPR001680 GO:0005515
Vimu9g00145 655 ProSitePatterns Trp-Asp (WD) repeats signature. 497 511 IPR019775 -
Vimu9g00145 655 MobiDBLite consensus disorder prediction 636 655 - -
Vimu9g00145 655 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 512 - -
Vimu9g00145 655 Coils Coil 147 174 - -
Vimu9g00145 655 SUPERFAMILY WD40 repeat-like 304 624 IPR036322 GO:0005515
Vimu9g00145 655 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 519 IPR001680 GO:0005515
Vimu9g00145 655 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Vimu9g00145 655 PRINTS G protein beta WD-40 repeat signature 497 511 IPR020472 -
Vimu9g00145 655 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Vimu9g00145 655 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 435 IPR001680 GO:0005515
Vimu9g00145 655 Gene3D - 280 615 IPR015943 GO:0005515
Vimu9g00145 655 PANTHER PROTEIN SPA1-RELATED 2 106 614 IPR044630 GO:0009640
Vimu9g00145 655 Pfam WD domain, G-beta repeat 478 510 IPR001680 GO:0005515
Vimu9g00145 655 Pfam WD domain, G-beta repeat 388 426 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00145 Vimu-Chr9 1755370 1760397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00145 390 573 Miscellaneous Gene Families AT5G08390 24.731 3.89e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00145 K16240 - gmx:100802144 713.375