Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00144 ATGAGTACTGCAAATGGTGGGACCGGGACTGGGACTGAGGAGCACAAGAGAAAAAGTAATGATTCTTTTCTTAAGAATGGGGGTCAGCAAAACATGTCAAGATCACCTAGATTGTGCACACCTATTAAGAAGGAATTGTCTGAAAATTTGCCAAATGACAATGTGATTGGTAATCAGGACAATGGTATGAATAGGTATGTAATTTCCTTAGCCGGATCTGGACTTCCTAGTACTGGTTTGTGTTCTGGTATAGATTCTGAACACATTGTTGAAAAGTTGTCTGTTGCTATTAGGAATTATAAGAGCAAGAATCCAGATTTAGTTACTCACCCACATAATTCAATACAGACAAGGAATCAATTAACTGTTGAGTCTAAGTATAATGACATAAATAGAGAAGTTGTTTCCAAGGTTGAAGAACAGATACCATTCAGATTAAGTAAGGTACTTAAGGGAAAGGATTTTGATGTTTGGGACCTGAAGCCTTTGTCTGGTAAGACTGTAAATCAGACTATAATCTCAAACAATGCACATCTTATTAGCAGTACAACCCAGAGTACTTCATCTGCATATAATTATCCTCAATTGATTGTAAAGCAAACTAGGAAGGGAAAGGAGGTTATTTGTGAAGATTTAAAAGACAAAAACTTCAGCATTGTAGAAGGACACAAGAGCCTGGAGGATGAAAAATCTTTTGCAGCCAAGTTTCAATCTGATACACTGAGGAGATCAAATGTTGATGATGATGATGATGATAAGCCTTTAGTGGAAGAAACTGTAGTGTCTGGTAGCAATGAAATAAACTTAAGAGAGTGGCTGAAGTCTGAATGTCATAGCATGAAGAAATTAAGAAAAATTCATATATTTAAGCAGGTATTGGAATTGGTTGATTTTGCACACTCACAAGGACTTGTCTTGCTAGACTTTTGGCCATCTTGCTTCACTTTATTGTCATCAAGTAAGATTAAGTACATTGGTTCATATGGTCAACAACGGTTAGGTAATGAATTCATGACCTGCAATATGACTAGGAAAAGGCCTCTGGAACAGAATACCTGTGCTTGCCAAAGTTCAAGTACAAAGCAGCAAAAGCTGTTTGAAGAGACAAGATCTTCTGAGCAGTCGCAACAATGCTCCTTTACTCATGACTTCAGGACAATGGTGAATCAAACTGACTCTGACACAATCAGATCCTTGGAATCAAGGAGTAAAGATATTTCTAATTGTCAACATACTTTTACCAAAGAAAATCAGTTTATGTCTGCTACCATTCCATTAGAAGAGAAGTGGTATTGTAGTCCAGAAATGCTGAATGATGGAGTCTGCACCTTGTCATCTAATATTTATAGCCTTGGAATTCTTCTTTTTGAATTGCTGTGTAATATTGAGTCAAGGGAGGCGCATTCAACTGCGATGTTGGAGTTGTGTCATAGAATCTTACCACCTAAATTTCTAGCAGAAAATCCAAAGGAAGCTGGCTTTTGTCTTTGGCTTCTGCATCCTGAACCATCCTCTCGTCCTAATGCTAGATTTCATTTTAGAAACTCATGTGAATTGTTCTTGGTCACTAGCACCTTGGAACTTCTTGGCTCATGGATCATTTTAGAGTCTGATTTTATACGAGAATCAGAGGAATCAAGCTCTATAGAAGATGTTGGAATATCTGATGATGAGGCTGAAACAGATAAATTACTACATTTTCTAACTTCACTCAAAGAAGAAAAGATGACACAGGCTTCCAAGTTGGAAGAACAGCTAAATTTGTTGAATGAAGATATTCAGGAGGTAGAAAGAAGATATTCATTTGGTACAGATTCAGTATTTCCTTTGGCACAAATGAAAAATTCAGAAGTGAGTGAGAAAAATTTGCATTTTCAAGATTCTTCTAGTTCAGACATCAGTAGATCCATTCAAAGGTCATTTGGTGATGAAGAAAGATTTATGGCTAACATAAGTCAGCTAGAGAATTCTTACTTTTCTGCAAGAATCCGAGTCCTGCCAAAAGATGCTTCATCTATTCCAAGCAATGATAAAAGTTTGATGGAAAATAGATGGAGATTGCCTCAAGGAGAGCATGCTAATAAGGAACCTAGAAGAATAAATACTTCTGTTGGTTGTCTAGGATCCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGCGTGGCAGATTAAGAAATAGAGATCTTCTCAGTTCTTCCAATGTAATGTGTGCTTTAAGTTTTGACCGTGATGAAGATTATATGGCAGCAGGAGGAGTGTCAAAGAAAATTAAGATTTTTGACCTCAATGCTATTTCAAGTGATTCTGTTGACATTCAGTACCCATTGGTTGAGATGACAAATAAATCAAAGCTTAGCTGTGTGTGCTGGAACACCAACATTAGAAATCATCTGGCATCTACTGACTATGATGGTGTTGTTCAGATGTGGGATGCAGACACTGGTCAGCCATTGTCCCAATATATGGAGCACCAAAAGAGAGCTTGGTCTGTTCATTTTTCTCTGTCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTAAAAATTCTCTGGGAACCATCTGGAACCCTGCCAATATATGCTGTGTTCAGTTCTCTTCTTATTCAACAAATCTTTTATTTTTTGGATCAGCTGATTACAAGGTTTATGGTTATGATCTTCGTAACACTAGGATTCCGTGGTGCACACTAGCTGGTCATGGCAAAGCTGTTAGTTATGTAAAATTTATAGATGCTGAAGCAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAACCAGCTCTTCTGGTTTGTCATCTGATTCTTGTGTCTTAAACTATAAAGGTCATAGTAATGAAAAGAATTTTGTGGGATTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTGTACTGTTATCACAAATCACTGCCAGTGCCAATTGCTTCTCACAAATTTGAGTCAATTGATCCTATTTCTGGTCATGTAAATAGTGGTGATAATAGTGGACAGTTTGTTTCTAGTGTTTGCTGGAGAAACAAATCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTGTGAAACTGTTGCAGATGGTCTGA 3135 0.3754 MSTANGGTGTGTEEHKRKSNDSFLKNGGQQNMSRSPRLCTPIKKELSENLPNDNVIGNQDNGMNRYVISLAGSGLPSTGLCSGIDSEHIVEKLSVAIRNYKSKNPDLVTHPHNSIQTRNQLTVESKYNDINREVVSKVEEQIPFRLSKVLKGKDFDVWDLKPLSGKTVNQTIISNNAHLISSTTQSTSSAYNYPQLIVKQTRKGKEVICEDLKDKNFSIVEGHKSLEDEKSFAAKFQSDTLRRSNVDDDDDDKPLVEETVVSGSNEINLREWLKSECHSMKKLRKIHIFKQVLELVDFAHSQGLVLLDFWPSCFTLLSSSKIKYIGSYGQQRLGNEFMTCNMTRKRPLEQNTCACQSSSTKQQKLFEETRSSEQSQQCSFTHDFRTMVNQTDSDTIRSLESRSKDISNCQHTFTKENQFMSATIPLEEKWYCSPEMLNDGVCTLSSNIYSLGILLFELLCNIESREAHSTAMLELCHRILPPKFLAENPKEAGFCLWLLHPEPSSRPNARFHFRNSCELFLVTSTLELLGSWIILESDFIRESEESSSIEDVGISDDEAETDKLLHFLTSLKEEKMTQASKLEEQLNLLNEDIQEVERRYSFGTDSVFPLAQMKNSEVSEKNLHFQDSSSSDISRSIQRSFGDEERFMANISQLENSYFSARIRVLPKDASSIPSNDKSLMENRWRLPQGEHANKEPRRINTSVGCLGSFFEGLCKFARYSKFEERGRLRNRDLLSSSNVMCALSFDRDEDYMAAGGVSKKIKIFDLNAISSDSVDIQYPLVEMTNKSKLSCVCWNTNIRNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSKNSLGTIWNPANICCVQFSSYSTNLLFFGSADYKVYGYDLRNTRIPWCTLAGHGKAVSYVKFIDAEAVVSASTDNSLKLWDLKKTSSSGLSSDSCVLNYKGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIASHKFESIDPISGHVNSGDNSGQFVSSVCWRNKSNMLVAANSVGIVKLLQMV 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00144 1044 ProSiteProfiles Trp-Asp (WD) repeats profile. 904 944 IPR001680 GO:0005515
Vimu9g00144 1044 SMART WD40_4 897 935 IPR001680 GO:0005515
Vimu9g00144 1044 SMART WD40_4 777 816 IPR001680 GO:0005515
Vimu9g00144 1044 SMART WD40_4 731 766 IPR001680 GO:0005515
Vimu9g00144 1044 SMART WD40_4 996 1042 IPR001680 GO:0005515
Vimu9g00144 1044 SMART WD40_4 854 893 IPR001680 GO:0005515
Vimu9g00144 1044 SMART WD40_4 946 985 IPR001680 GO:0005515
Vimu9g00144 1044 SMART WD40_4 819 853 IPR001680 GO:0005515
Vimu9g00144 1044 SUPERFAMILY WD40 repeat-like 740 1040 IPR036322 GO:0005515
Vimu9g00144 1044 Coils Coil 572 599 - -
Vimu9g00144 1044 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 904 937 - -
Vimu9g00144 1044 Gene3D - 710 1044 IPR015943 GO:0005515
Vimu9g00144 1044 ProSitePatterns Trp-Asp (WD) repeats signature. 803 817 IPR019775 -
Vimu9g00144 1044 MobiDBLite consensus disorder prediction 1 36 - -
Vimu9g00144 1044 Gene3D Transferase(Phosphotransferase) domain 1 265 517 - -
Vimu9g00144 1044 ProSiteProfiles Protein kinase domain profile. 135 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00144 1044 ProSitePatterns Trp-Asp (WD) repeats signature. 922 936 IPR019775 -
Vimu9g00144 1044 PANTHER PROTEIN SPA1-RELATED 2 28 1044 IPR044630 GO:0009640
Vimu9g00144 1044 SUPERFAMILY Protein kinase-like (PK-like) 267 514 IPR011009 -
Vimu9g00144 1044 SMART serkin_6 191 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00144 1044 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 825 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00144 Vimu-Chr9 1744273 1750414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00144 K16240 - gmx:100799267 1529.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00144 9 1744273 1750414 Vimu9g00144 9 1744273 1750414 ECH