Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00060 ATGAATGGGGTTGAGGCTGAGAAGCAGCAAGAGAATGGAAATGGGAAAATGGGTTATGATGTTCTGGAGAAAATAGACTATGTGTTTAAGGTGGTGGTGATAGGGGATTCAGCAGTTGGCAAGACTCAAATACTGTCAAGGTTTGCAAAGAATGAGTTTTGCCTTGACTCAAAGTCCACCATTGGTGTTGAATTCCAGACCAAGACTGTCACTATTAATGCCAAACTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCTGTAACAAGTGCCTACTACAGAGGTGCATTAGGGGCAATGCTGGTGTACGACATAACAAAGAGGCAATCATTTGACCATGTTGCGAGGTGGCTGGAGGAGCTGCGTGCACACGCAGATAGCTCCATTGTGATCATGTTGGTTGGTAACAAAGCTGACCTTGTGGAGCAGAGAATGGTGCCAACTGAAGATGCAGTGGAGTTTGCTGAGGACCAAGGTCTCTTCTTCTCTGAGACTTCAGCTCTCAGTGGTGACAATGTGGAGAGTGCATTCCTCAAGCTGCTAGAGGAGATCAATAGTGTAGTGTCTAAAAAGGCATTGGAATGTGGTTGTGGGAAGCTCAATGGTGACAGCAATTTTGCCTCATTCAAAGGAACTAAGGTTGATATACTCTCAGTTCCTGAATTGGAAATCAGTGAGATGAAGAAATTGTCTTCTTGCTCTTGTTAA 723 0.4481 MNGVEAEKQQENGNGKMGYDVLEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCLDSKSTIGVEFQTKTVTINAKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWLEELRAHADSSIVIMLVGNKADLVEQRMVPTEDAVEFAEDQGLFFSETSALSGDNVESAFLKLLEEINSVVSKKALECGCGKLNGDSNFASFKGTKVDILSVPELEISEMKKLSSCSC 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00060 240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 192 IPR027417 -
Vimu9g00060 240 FunFam Ras-related protein RABA3 21 214 - -
Vimu9g00060 240 NCBIfam small GTP-binding protein domain 28 182 IPR005225 GO:0005525
Vimu9g00060 240 SMART arf_sub_2 14 193 - -
Vimu9g00060 240 SMART rho_sub_3 31 195 IPR001806 GO:0003924|GO:0005525
Vimu9g00060 240 SMART rab_sub_5 29 192 - -
Vimu9g00060 240 SMART ran_sub_2 34 235 - -
Vimu9g00060 240 Pfam Ras family 30 190 IPR001806 GO:0003924|GO:0005525
Vimu9g00060 240 SMART ras_sub_4 26 192 - -
Vimu9g00060 240 PRINTS Transforming protein P21 ras signature 29 50 - -
Vimu9g00060 240 PRINTS Transforming protein P21 ras signature 70 92 - -
Vimu9g00060 240 PRINTS Transforming protein P21 ras signature 52 68 - -
Vimu9g00060 240 PRINTS Transforming protein P21 ras signature 132 145 - -
Vimu9g00060 240 PRINTS Transforming protein P21 ras signature 167 189 - -
Vimu9g00060 240 Gene3D - 22 204 IPR027417 -
Vimu9g00060 240 CDD Rab11_like 26 189 - -
Vimu9g00060 240 PANTHER DRAB11-RELATED 24 200 - -
Vimu9g00060 240 ProSiteProfiles small GTPase Rho family profile. 22 202 - -
Vimu9g00060 240 ProSiteProfiles small GTPase Ras family profile. 23 222 IPR001806 GO:0003924|GO:0005525
Vimu9g00060 240 ProSiteProfiles small GTPase Rab1 family profile. 24 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00060 Vimu-Chr9 770966 772207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00060 K07904 - gmx:100799439 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00060 9 770966 772207 Vimu9g00060 9 770966 772207 ECH
Vimu2g01517 2 10506807 10507714 Vimu9g00060 9 770966 772207 PCT