Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00043 ATGTCCAACGATCCAAGGTCTCTGAGTTACTCCTTTCTAACTCACTTCAACATGGCGATGGCAGACCCAGAACCTTGGTCGTTCCTCACCCTCAAAATGGGCATGGGAGAGAAGAGTCCAAGGAGTTTCCAATTGCACCACCGTGATGGGAAGAAGCAAGAGTTCAGAGGGGTGCCAAAAGGGTGCATGGCAATTAAGGTTGGTCAAGGAGAAGAGCAACAAAGGTTCGTGGTTCCTGTCATGTACATCAATCATCCTCTCTTCATGCAGCTTCTCAAGGAGGCGGAGGAAGAATACGGTTTCGACCAGAAGGGAACCATAACCATCCCTTGCCATGTTGAGGAATTCAGAAACGTGCGGGGTCTGATTGATAGGGACAGGTCCCTTCACCACCACCACCATGTTGGTTGCTTTGGCTTCTGA 423 0.4988 MSNDPRSLSYSFLTHFNMAMADPEPWSFLTLKMGMGEKSPRSFQLHHRDGKKQEFRGVPKGCMAIKVGQGEEQQRFVVPVMYINHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGLIDRDRSLHHHHHVGCFGF 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00043 140 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 49 118 IPR003676 GO:0009733
Vimu9g00043 140 Pfam Auxin responsive protein 52 119 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00043 Vimu-Chr9 520444 520967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00043 58 136 Calmodulin-binding Proteins AT5G20810 45.000 8.76e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00043 K14488 - gmx:111188139 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00043 9 520444 520967 Vimu9g00043 9 520444 520967 ECH