Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00026 ATGGCAACTTTGACTGCTTCGAGTAACTTGATCTCTGGAAGTTCTCATGCCCAACATGGACCAACTGCATCATATGAGTCTAAAGCAGTGGCAATGGGATTTAAATCTCTAAAGCACACCAATACTCATAATGGACTGAGAATTTTGAACCCGGTGGATGAGCTACTTAACAGGACCCCAATAAAAAATAATTCAGTACAAGCTAAGAGGAAGGGACTTCAAGGCAAGAATGTCAAGCCTAAAGGTGTAATCCTATGTGGCATGAATTTGATTTTTGTTGGAACGGAGGTGGGTCCATGGAGCAAAACTGGTGGGTTAGGAGATGTTCTTGGAGGTCTTCCACCAGCATTAGCAGGTTATGGACATCGAGTTATGACTATCGCGCCACGTTATGACCAATACAAAGATGCCTGGGATACAGGTGTTGTGGTTGAGCTGAAAGTAGGGGATAGAACTGAAAAGGTTCGCTACTTCCATTGCTATAAGAGGGGAGTTGATCGTGTCTTTGTGGATCACCCTTTGTTTCTTGCAAAGGTATGGGGAAAAACCGGAACCAAACTTTATGGACCAACTACAGGAGATGATTATGATGACAACCAACTACGTTTTAGTCTATTTTGCCAGGCAGCTTTGGAAGCACCAAGAGTTCTCAATCTCAATTCCAGTAAATATTTCTCTGGATCATATGGTGAAGATGTAATTTTCATTGCCAACGATTGGCACAGCGCCCTTATCCCCTGCTACTTGAAATCTATGTACCAGTCAGTAGGCATCTATAAGAATGCTCGAGTTGCTCTATGTATCCACAACATTGCTTACCAAGGAAGATTTGCATTTGCAGACTTTGCACTTCTAAACCTCCCTGACCAATTTAAAAGCTCCTTTGACTTTATTGATGGGCATCTTAAACCAGTGGTTGGAAGGAAAATCAATTGGATGAAAGCTGGAATTATAGAATCATGGCTTGTGATAACTGTTAGTCCAAACTATGCTATAGAACTATTGTCAGGTCCAGACAAAGGTGTGGAACTGGACAACATCCTTCGCAAAGTTGAAGATCGTTTCATTGGAATTGTGAATGGCATGGATGTTCAGGAGTGGAATCCATCCACTGACAAGTATATAGCCGTCAACTACGATGCTTCAACAGTTTCGGAAGCAAAGGCTCTTCTGAAAGAAGCCCTCCAAGCAGAATGTGGGTTGCGAGTGTGCAGAAATACTCCTCTCTTTGTTTTCATTGGTAGGCTTGAGGAGCAAAAAGGTTCCGATATTCTTGCAGAAGCCATTCCTCAATTTATCAAGGAGAATGTTCAGCTGGTAGCCCTAGGAACAGGAAAAAAACAAATGGAAAAACAACTTCAGGAACTTGAAATAGCATACCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTGGCCCACATGATAATTGCTGGTGCTGATTTTATATTGGTTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGAACAGTACCTATTGTTGCCTCAACTGGTGGATTAGTTGACACTGTCAAAGAAGGCTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAGTGTGAAGCTGTGGATGCTGCTGATGTGGATGCTATAGCAAAGACTGTCAAAAGGGCCCTTGCAGTCTACGGAACTCCAGCTTTCACAGAAATGATCAAGAATTGCATGGCTCAGGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTGTTGCTAAGCTTGGGAGTTCCTGGCAGTGAACCTGGAACTGCTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTGGCAACTCCATAA 1854 0.432 MATLTASSNLISGSSHAQHGPTASYESKAVAMGFKSLKHTNTHNGLRILNPVDELLNRTPIKNNSVQAKRKGLQGKNVKPKGVILCGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAGYGHRVMTIAPRYDQYKDAWDTGVVVELKVGDRTEKVRYFHCYKRGVDRVFVDHPLFLAKVWGKTGTKLYGPTTGDDYDDNQLRFSLFCQAALEAPRVLNLNSSKYFSGSYGEDVIFIANDWHSALIPCYLKSMYQSVGIYKNARVALCIHNIAYQGRFAFADFALLNLPDQFKSSFDFIDGHLKPVVGRKINWMKAGIIESWLVITVSPNYAIELLSGPDKGVELDNILRKVEDRFIGIVNGMDVQEWNPSTDKYIAVNYDASTVSEAKALLKEALQAECGLRVCRNTPLFVFIGRLEEQKGSDILAEAIPQFIKENVQLVALGTGKKQMEKQLQELEIAYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDAADVDAIAKTVKRALAVYGTPAFTEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGTADGEEIAPQAKENVATP 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00026 617 FunFam Starch synthase, chloroplastic/amyloplastic 89 367 - -
Vimu9g00026 617 Hamap Glycogen synthase [glgA]. 88 591 IPR011835 GO:0004373
Vimu9g00026 617 MobiDBLite consensus disorder prediction 593 617 - -
Vimu9g00026 617 MobiDBLite consensus disorder prediction 1 22 - -
Vimu9g00026 617 Gene3D Glycogen Phosphorylase B; 363 573 - -
Vimu9g00026 617 NCBIfam glycogen/starch synthase, ADP-glucose type 88 589 IPR011835 GO:0004373
Vimu9g00026 617 Gene3D Glycogen Phosphorylase B; 90 582 - -
Vimu9g00026 617 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 79 588 - -
Vimu9g00026 617 FunFam Starch synthase, chloroplastic/amyloplastic 368 573 - -
Vimu9g00026 617 Pfam Starch synthase catalytic domain 90 350 IPR013534 -
Vimu9g00026 617 Pfam Glycosyl transferases group 1 407 529 IPR001296 GO:0016757
Vimu9g00026 617 CDD GT5_Glycogen_synthase_DULL1-like 89 590 - -
Vimu9g00026 617 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 62 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00026 Vimu-Chr9 255004 259707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00026 1 617 Glycosyltransferase AT1G32900 69.194 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00026 K13679 - gmx:100817424 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00026 9 255004 259707 Vimu9g00026 9 255004 259707 ECH