Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00025 ATGGAGCCCGACGTCCGTTCGCTCCTTAACTCTGCCTCCTCCTCCGCTTCTTCCTCCGACGCCGACGACGATGCTCCCCACCGCACCATCGATGAAATTCTCAACGACTGTGACACTTCTTCTTCCTCAAGTTCTCCCCCTTCCTCTCCTTCTCACTCTCTCTCTCCACTCACCAATTCCCATCTTCAAAACCCCACACTTCAACCAAAACCACTCCAACCCGCACTCGATTCAATTTCTCGGCTCAAACCAGCCGAATTCTCCGACCGCACACGCGTTTCGCGTCCGTTCTCTTCTCTACTCCAGGGCGTGCGGTCCAATGCGAAGCCGGGCGCCGCGCTAGCGGCTGCTGCTGCGGCTTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATAATTTCCAGGAGGAAATCTGCGGCTGCGATCAGCACTGAGTTGAGTTCGACCGCTGCCGCTAGCGACGATTATTCCGATGTTTCTTCTAAAGGCGAATTGGGCGAGCTTAGTGAGAAATACGATCCTGTGCCGCAGAAAATCGAGACTCAGTCTAGTGAAAGTGCTTCTGTTAACGGCGAGCGTGTTGAGAGTGATGCAGATATTGCCATTGATTTGAAGGCTGGCAGTGCCGCTGACAATCAGGTGCATAGTGATACTGATAATGACAGTGGGGCTGGCGATGATGATGGAAATGGCAATTATAATGATTCTTCTATAGTGAGTGAGGAGAATAGGAATTTAGATGAGGTTGACGGTTACCATGGGAAGGATATGAGTTCTTCAACGTTTGATGAAGATAATAATGATCGTGACTTGGATGGGAATGATGGTTCTGAAAAGAGAATCACAGCTATGGATTCAGCTGTGGAAATAGAAGAAACGGTGGATAATGGTGAAAGATCTGTGGATCATGTTAAAAATGAGCTGAGTGGTGGCGGTAGTGACGAGGGTAGTTCATTGGGTGATGTTTCAGAGCTAGTGGAAGAGAGGCTTGAGGAATTGGAAAGCAGAAGGGCTGCTCAGAGAGCAGAGAAGAAACGAGAATTTTCAATGAAACCACTTGAATTGGCTGAAAAATTGGAGAAAAAGCGAGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCGGCCCAGCCAATGAGACTCGAGGGCGTTCGGAGAGGGTCCACGACGTTGGGATACTTTGATGTTGATGCTGATAATGCAGTCACCAGGGCGATTTCGTCCCAAACATTCAGGCGTGAGCAAGGTTCTGCCCGAGCCGTGGCAGTTCATGCTAATTATATTGCAGTAGGAATGTCAAAAGGGCTCATTGTTGTCTTTCCCAGTAAATATTCCATTCATCATGCTGATAGCTTTGATGGAAAGATGTTGATGCTTGCTATACAAGGTGATCGATCGCGTGCTCCAGTGACATCTATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTTATCCTGTGGGATGTACAGAAAGGGGTTGTAGCAAAAGTTATTAGTGGTGAGCATACAGCACCAGTAGTACATACCTTATTTCTAGGTCAAGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTGCACATTATCTCGGTTGTTCCTTTGTTCAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGACAAAGTACAGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTCGATGACTTCAGCGGAAGTTCGCCTTTTTCTCAGGGAAACACCTCAACCCCAGCCAGCAGTATAAGCAGCATGATGGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAACGAATCCTCTTCTTTGTTGGAAGAAGGTGTGGTTGTATTTGTAACTCATCAAACTGCATTGGTGGTACGGCTGAGCCCTACATTGCAAGTCTATGCTCAACTCTCTAGGCCAGATGGGGTTCGGGAGGGGTCTATGCCATATACTGCATGGAAATACATGACACAAACACATAGTTCTACTGAAAATATGTCTGCAGAAGCTAGTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGTAAGGTTCTGGTTGCAAAGTTAGTGAAATCAGAACTAAAAGTATATGGAAATTGGTCTCTCGAAGGTGCAGCTATAGGTCTAGCGTGGTTGGATGATCAGTTAAAAAGATGTTTTCTTGCTCAGATGCTGGAAGTTCAAACTTCAAGTGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTATTGCTATAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATGTATTCGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATATACTTGGTCCAACACATCTTCTCATTTCTCGTCTTCTACCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTATATGATGGCCATGCTCATGGGGTTATTGATCTTCCTAGAACCTTGGATGCCGTACATGAGGCCATAATGCCCTTCTTGGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTACATTTCAGTGGCATTCTGCAACCAAATAGGTAAAGTGGACCCATCCAATAATTCAAATAGTAGAAGCAATTCAGTACACTGTGAGATAAAGGAGCAATACAACCGTGTTGGTGGGGTTGCTGTTGAATTTTGTTGTCATATCAAACGGATGGACATTCTTTTTGATGAAATTTTCTCCAAGTTCGTGGGTGTTCAACAACGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAAGACATGCTTGGATCTCTACCTCCCGAGATCATGCAAGAATTGGTTGAGTATTATAGTACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCATATGGATATATCATCCTTGGATTTTAATCAGGTCGTCAGGTTATGCCGGGAGCATGGACTTTATAGTGCCCTGGTTTATGTCTTCAATAAAGGATTAGACGACTTTAGGGCACCTTTGGAGGAGCTGTTTGCTGTCTTACAAAATAGCCCAAAGGAAAGTGCAACTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGCCGTGGAACTATTCCTCCCACACGCTTACCTTCTCTTAGAGGAGAACTTGTGGAGTTTTTGTTAAAGGACTCCTGTACTTTGAAATCTCACACCATTTCAGACTCTGAGTCCAGAGGACCCCACCCGAATCTTTATCTTCTTTTAAAGTTAGACACTGAAGCTACCTTAGATGTCCTCAGATGTGCTTTTATTGAAGATGAAATTCCAAATGCCTGCTCATCTTCACCAGATTCAGCCAATAAACCTATAGAGGAAGCAAAAAAAGAAGATAAAGCTACTGAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCACTCATTCAAATAATTGATATGAATAATGTTCAGACAGATACAACATTTAGTAGTGGTGAAGATGGGTTGATAAAAGAGTGGTCTTCGAAGGACATAGGTTATCTATTTGAGTTCATTGCATATTATGTTGCTACCCAAAGAGCTAAAATTTCAAAGGGTGTACTGTGTCAAATATTGAAATATTTGACATCTGATAGTCACTCCTCTACGGATATTTCTGTTTATTGCTCAACTCCAAAAAACAGAGAGAAGCAAGTGCTAGCACTGTTGGAAGTACTTCCTAAGTCAGACTGGGATCCTTCATTTGTGCTAGATCTATGTGAAAGAGCCAAATATCATCAGGTTTGTGGATTGATCCATAGTTTCAGACATGAATATGTGGCTGCACTGGATAGTTATATGAATGATGTACACGAGCCTATTCATACCTTTTCCTTTATTAATAAAACATTATCACAGTTGACTGACAATGAGCATGTAGCATTTCGGTCAGCAGTCATATTGCGAATTCCTGAATTGGTTGAACTAAGCAGGGAGGGTGCATTCCATGTGGTTATCAGTCATTTTAGCGAAGAAAGTTCCCATATCATAACTGAACTTCACTCTCATCGAAGAAGTCTTTTTCTTTATTTAAAGACGCTCATTGAGTTTCACTTATTTGGCACCCTAGATTTGTCTAATTTGAGCAAGGATGACACTATGAATCCTCTTAATGGAAGGCAGGTTAAGGATCACTCTGAAGGAGTTAGAGATTACTTAGAGAATATATCCAATTTCCCCAAGTTCATGCGGGAAAAACCTATTCACGTGCCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCCACTACGAAGGTAGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGTCTCTGTCAAGAATATGGCATTATAGATGCAACTGCGTTCTTATTAGAAAGAGTTGGTGATGTCGGTAAAGCTCTTTCAATTACACTTTCTGATCTTAATGATAAATTCGTTAAGCTTGATGCTGCTGTGGAAGCTGTAGTTTTAAACCGTAGCAGAGTTGGTTCTTCACATGTGGAAGTATTCGAAACTGTTTTAAGAACAAAGGAGGGAAGGGACATCCAAGATCTATTGCGTGCTTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTGAATCCTGAGGAGTCAGAAGCGCATTGGTTTAAATTACTTGATTCGTTTTGTGACCCATTGATCGATTCAAATGTTAAAGGAGCATATGAAAGTAAAAATCATTTTGGAATGTTAGCTGGATCAGCAGATTCACAACAGGACAAGGATGCCTATAAAAGCAGCTGGAAAATTTCAAAATCCCGGAATGGTCATATCTTGAGAAAATTGCTATCACAGTTCATTAAAGAGATTGTAGAGGGAATGATTGGTTTTGTTCACCTTCCAACAATCATGTCTAAGCTTCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGTTGATAGAAGATGACTCGTTCTATACAATGAGTTTACTCAAGAAAGGGGCCTCTCATGGATATGCCCCCAGGAGTCTTGTGTGCTGTATTTGTAATTGCCTTCTTACAAAGAACTCTGGTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATGTCCAATGTGAAGTTTCGGAATTTGAGGCATCAAGCAGAGGATCTTCGTCGGGATGCCCTCTATGCATGCCTGGCAAGAAATCCCAGCAGTCCCGAAACAAATCAATCATTGCAACTAATGGCTTGGTCAACAAATTCTCATCAAGGCGCCAGTACCCCCACGGAAGTACCATCCATCCTCATGACAGTGATTTGACAGAGAATATGTATGGGCAGCAACAGATATCACGGTTTGAGATCTTGAGCAACCTGCAGAAAAATCAGAGATTTATGCAAATAGAAAACTTGCCTCAGTTGAAGCTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAGTAAAGTTGCAAACTTTCTGACTGGCGAAAGTAGCAATAATTCTTCTGCTATTGAGAAACAAAGTAGAAACAAGCAAAACCGGGAGCTAAGAGTTAAGGGTTCATCAATCCGATTTCCTTTAAAATCAAGTATATTTGGCAAGGAGAAGACAAATAAGCGGTGA 5772 0.4262 MEPDVRSLLNSASSSASSSDADDDAPHRTIDEILNDCDTSSSSSSPPSSPSHSLSPLTNSHLQNPTLQPKPLQPALDSISRLKPAEFSDRTRVSRPFSSLLQGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAAISTELSSTAAASDDYSDVSSKGELGELSEKYDPVPQKIETQSSESASVNGERVESDADIAIDLKAGSAADNQVHSDTDNDSGAGDDDGNGNYNDSSIVSEENRNLDEVDGYHGKDMSSSTFDEDNNDRDLDGNDGSEKRITAMDSAVEIEETVDNGERSVDHVKNELSGGGSDEGSSLGDVSELVEERLEELESRRAAQRAEKKREFSMKPLELAEKLEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSARAVAVHANYIAVGMSKGLIVVFPSKYSIHHADSFDGKMLMLAIQGDRSRAPVTSMSFNQQGDLLLAGYGDGHLILWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLLHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSSPFSQGNTSTPASSISSMMGVVGGDAGWKLFNESSSLLEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTHSSTENMSAEASERVSLLAIAWERKVLVAKLVKSELKVYGNWSLEGAAIGLAWLDDQLKRCFLAQMLEVQTSSGQLYLFSKDGTVIHQTSIAIDGIGGDDLVSYHTHFINVFGNPEKAYHNSVAVRGASIYILGPTHLLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAHGVIDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKVDPSNNSNSRSNSVHCEIKEQYNRVGGVAVEFCCHIKRMDILFDEIFSKFVGVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSPKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRGELVEFLLKDSCTLKSHTISDSESRGPHPNLYLLLKLDTEATLDVLRCAFIEDEIPNACSSSPDSANKPIEEAKKEDKATETQNALVQNTVDALIQIIDMNNVQTDTTFSSGEDGLIKEWSSKDIGYLFEFIAYYVATQRAKISKGVLCQILKYLTSDSHSSTDISVYCSTPKNREKQVLALLEVLPKSDWDPSFVLDLCERAKYHQVCGLIHSFRHEYVAALDSYMNDVHEPIHTFSFINKTLSQLTDNEHVAFRSAVILRIPELVELSREGAFHVVISHFSEESSHIITELHSHRRSLFLYLKTLIEFHLFGTLDLSNLSKDDTMNPLNGRQVKDHSEGVRDYLENISNFPKFMREKPIHVPDDLIELYLELLCHYEGSSVLKFLEMFDSYRVEHCLRLCQEYGIIDATAFLLERVGDVGKALSITLSDLNDKFVKLDAAVEAVVLNRSRVGSSHVEVFETVLRTKEGRDIQDLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLIDSNVKGAYESKNHFGMLAGSADSQQDKDAYKSSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCICNCLLTKNSGSSGIRIFNCGHAIHVQCEVSEFEASSRGSSSGCPLCMPGKKSQQSRNKSIIATNGLVNKFSSRRQYPHGSTIHPHDSDLTENMYGQQQISRFEILSNLQKNQRFMQIENLPQLKLAPPAVYHEKVSKVANFLTGESSNNSSAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR 1923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 211 240 - -
Vimu9g00025 1923 CDD RING-H2 1732 1781 - -
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 1144 1166 - -
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 176 191 - -
Vimu9g00025 1923 SMART WD40_4 404 441 IPR001680 GO:0005515
Vimu9g00025 1923 SMART WD40_4 454 495 IPR001680 GO:0005515
Vimu9g00025 1923 ProSiteProfiles Zinc finger RING-type profile. 1732 1780 IPR001841 -
Vimu9g00025 1923 Coils Coil 323 343 - -
Vimu9g00025 1923 Gene3D - 385 544 IPR015943 GO:0005515
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 241 309 - -
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 160 174 - -
Vimu9g00025 1923 Pfam Golgi CORVET complex core vacuolar protein 8 950 1134 IPR025941 -
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 144 326 - -
Vimu9g00025 1923 SUPERFAMILY RING/U-box 1725 1781 - -
Vimu9g00025 1923 PANTHER VACUOLAR PROTEIN SORTING VPS41 212 1853 IPR045111 GO:0006623
Vimu9g00025 1923 ProSitePatterns Trp-Asp (WD) repeats signature. 482 496 IPR019775 -
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 1879 1903 - -
Vimu9g00025 1923 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 504 IPR001680 GO:0005515
Vimu9g00025 1923 SUPERFAMILY WD40 repeat-like 413 540 IPR036322 GO:0005515
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 35 73 - -
Vimu9g00025 1923 MobiDBLite consensus disorder prediction 1 126 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00025 K20178 - gmx:100780869 3037.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00025 9 231797 247355 Vimu9g00025 9 231797 247355 ECH