Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02570 ATGGATGGAAATTTCCTTCTTTCATCTACTTCTACAAGGAATGATTTGTCCTCACTTATCTTTCTTGATCTCTCCAATAACTTGCTAAAATCATCTCCAATGTTTTACTGGCTTTTTAACTTCACCACTAATCTGCATTTCATTGACGTTAATGGTAACTTGTTAGAAGGTCCCATTCCAGATGAATTTGGGAAAGCGATGAACTCTCTTGAATATCTTTCTCTCTGCAATAACAAACTCAAGGGCAAGATTCCATCTTTCTTTGGAAGGATGTGCAGATTACAAATATTAGACCTCTCAAATAACAAGTTAAATGGTGAATTTCCGGGCTTCATTCAAAATTCTTCGTGGTGCAGCAGACACATATTTCGGGAATTGAACTTATCTTATAACCAAATTACTGATAAGATACCCAAGAGCATCAGACTGCTATCTGAGTTGGAAATTTTATCATTGCAGGGGAATTCTTTAGAGAGTGATGTTAGTGAATCTCATCTTTCTAATTTTTCCAAATTATATTACTTAGACTTGTCAGGACCGAGTTTTCCTAATTGGATTCAGACTCAAAATTCCTTAATCAAACTAGATATATCTGATAATGGGCTGAATGATCTCGTACCAGCATGGTTTTGGAACAAGTTGCAAACTCTATACATTCTGAATATGGCTCACAATAATCTCATTGGTTCAATCCCTAATATGCAACTGAAGCTTCCTTTCAGACCATCTATACTTTTAAGTTCAAATAAATTTGAGGGAAAAGTTCCATTATTTTTGCTACAAGCTTCCGAGTTGTTACTCTCTACAAATAAATTTTCAGATTTCTCATGTGGAAACATGATAGATACAAACTTGGCCACTTTAGACTTATCACATAATCAAATAAAGGGGCAACTTCCAGATTGTTGGAAATCAATAAATCGATTATTGTTTCTTGATATAAGTAGCAATGAATTGTCAGGGAAACTTCCTATCTCTATGGGCAGCCTTGTTAACTTGGAAGCTTTGGTTTTAACAAACAATAGTTTAATGGGTGAATTGCCTTCCTCATTGAAGAATTGTAAGAATTTAATTATGTTGGATGTGAGTGAGAATATGTTGTCGGGCCCAATACCATCATGGGTTGGAGAAAGCATGCAACAAGTGATAATCTTGATCATGCGAGGGAATAACTTCCCTGGAAAGATTCCCCTTGAGCTATGTTATTTGAAGCGTATTCAATTATTGGATCTTTCCAAGAATAAGTTATCAGAAGAAATTCCACCTTGCTTAAACAATTTTACTGCATTGTCTGAAAAGATCATCAATAGAGTTGAAACTGAAAGTCGGGTGTATTGGTACAATAGTACTTACTATGAAATTTATAATCTTTTCAGTTATAGTTATTATGAGATTCATATAACATGGATGTGGAAAGGTGTGGAACGCAACTTCACACATCCTGAGTTGATTCTTCTGAGCATTGATCTCTCATGTAACAATTTAATAGGTGAAATCCCACAAGAGATTACAAACATGGTCGGGTTAGTTTCTTTGAATTTATCAAGAAACTATTTGAGTGGAGAAATTCCTTCAAACATTGGAAATTTAAGTTCACTTGAATCCCTTGACTTGTCAAGAAATAAATTCTATGGAAGAATTCCTTCTTCTCTTTCCCAAATGGATTTTCTCCAAAAATTAGACTTGTCACACAATTCTCTTTCTGGAAGAATCTCATTGGGAAGACACATGGATACATTTGATGCCTCTTGTTTTGAAGGAAATGTTGATCTTTGTGGTAAACAACTTAACAAGAGTTGTGCAGGAGATCAGTCATTAGTCAAGCCTGAAAAAGCAGCAGGTCATGGAGAATATTATGTTTTCTATGAAGCATTCTACATGAGCATGGGGATAGGATTCTTCGCTGGCTTTTGGGGCTTATTAGGTCCATTACTACTTTGGAAACCATGGAGAATGACTTATATGTGGTTCTTGAATAAACTGATAGACTTTCTACTTGTAATGGTTGAAGTGAACTTAGCAAAGCACTAA 2031 0.3516 MDGNFLLSSTSTRNDLSSLIFLDLSNNLLKSSPMFYWLFNFTTNLHFIDVNGNLLEGPIPDEFGKAMNSLEYLSLCNNKLKGKIPSFFGRMCRLQILDLSNNKLNGEFPGFIQNSSWCSRHIFRELNLSYNQITDKIPKSIRLLSELEILSLQGNSLESDVSESHLSNFSKLYYLDLSGPSFPNWIQTQNSLIKLDISDNGLNDLVPAWFWNKLQTLYILNMAHNNLIGSIPNMQLKLPFRPSILLSSNKFEGKVPLFLLQASELLLSTNKFSDFSCGNMIDTNLATLDLSHNQIKGQLPDCWKSINRLLFLDISSNELSGKLPISMGSLVNLEALVLTNNSLMGELPSSLKNCKNLIMLDVSENMLSGPIPSWVGESMQQVIILIMRGNNFPGKIPLELCYLKRIQLLDLSKNKLSEEIPPCLNNFTALSEKIINRVETESRVYWYNSTYYEIYNLFSYSYYEIHITWMWKGVERNFTHPELILLSIDLSCNNLIGEIPQEITNMVGLVSLNLSRNYLSGEIPSNIGNLSSLESLDLSRNKFYGRIPSSLSQMDFLQKLDLSHNSLSGRISLGRHMDTFDASCFEGNVDLCGKQLNKSCAGDQSLVKPEKAAGHGEYYVFYEAFYMSMGIGFFAGFWGLLGPLLLWKPWRMTYMWFLNKLIDFLLVMVEVNLAKH 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02570 676 SUPERFAMILY L domain-like 14 257 - -
Vimu8g02570 676 PANTHER LRR RECEPTOR-LIKE KINASE 14 116 - -
Vimu8g02570 676 Gene3D Ribonuclease Inhibitor 1 118 IPR032675 -
Vimu8g02570 676 Gene3D Ribonuclease Inhibitor 181 603 IPR032675 -
Vimu8g02570 676 Pfam Leucine Rich Repeat 332 354 IPR001611 GO:0005515
Vimu8g02570 676 SUPERFAMILY L domain-like 261 594 - -
Vimu8g02570 676 Pfam Leucine rich repeat 509 567 IPR001611 GO:0005515
Vimu8g02570 676 Pfam Leucine rich repeat 44 104 IPR001611 GO:0005515
Vimu8g02570 676 SMART LRR_typ_2 16 37 IPR003591 -
Vimu8g02570 676 SMART LRR_typ_2 144 168 IPR003591 -
Vimu8g02570 676 SMART LRR_typ_2 91 114 IPR003591 -
Vimu8g02570 676 SMART LRR_typ_2 530 554 IPR003591 -
Vimu8g02570 676 SMART LRR_typ_2 403 427 IPR003591 -
Vimu8g02570 676 SMART LRR_typ_2 283 305 IPR003591 -
Vimu8g02570 676 SMART LRR_typ_2 506 529 IPR003591 -
Vimu8g02570 676 SMART LRR_typ_2 330 354 IPR003591 -
Vimu8g02570 676 FunFam Tyrosine-sulfated glycopeptide receptor 1 372 605 - -
Vimu8g02570 676 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 279 371 - -
Vimu8g02570 676 Gene3D Ribonuclease Inhibitor 119 180 IPR032675 -
Vimu8g02570 676 PRINTS Leucine-rich repeat signature 530 543 - -
Vimu8g02570 676 PRINTS Leucine-rich repeat signature 94 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02570 Vimu-Chr8 34904897 34907018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02570 15 663 Miscellaneous Gene Families AT3G53240 29.112 6.28e-68 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02570 - - pvu:PHAVU_004G100300g 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02570 8 34904897 34907018 Vimu8g02570 8 34904897 34907018 ECH