Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02175 ATGTTGTCTCTCAGGCTAACCTCTTTCACCCACCTCTTATCCCCGACCTCTTCCGCCGCCATCGCGCGCCGTTCCCGCGCGATTCTCCGGCGGCGAAACCACCTCCGGAAAAGGCCGCTTGCCGCCTCGTTCTCCGCCCAGAGCGCGACGGCGGAGACACAGGACAGAGTCAACAACTCGAAGAACCGAGTTCCCGAGCAAGTCATCACGCCACGATCACAGGACTTTAACGCGTGGTATCTCGACGTTATTGCTAATGCTGAGTTGGCCGATTATGGTCCGGTTCGCGGCACCATGGTCATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGGAATACTTGAATGTGAAGTTCAAGGAGACTGGGCACAGTAACATGTATTTTCCCCAGTTTATCCCATACTCTTTTATAGAGAAAGAAGCTAGTCACGTTGAGGGTTTCAGTCCTGAATTAGCTCTGGTGACAATTGGGGGTGGAAAAGAACTTGAAGAGAAACTCGTGGTCCGGCCTACAAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTATCGTGATCTTCCTCTCTTGATTAATCAGTGGGCAAACGTGACTAGATGGGAGATGCGCACTAAACCATTTGTGAGAACTCTTGAATTTCTTTGGCAAGAAGGGCATACTGCTCATGCTACTCCAGAGGAGGCAGAGGCTGAGGCTATACAGATGATTGACATCTATACCAGATTTGCGTATGAGCAAGCTGCAATACCTGTTATTACTGGTCGAAAATCTAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACAATTGAGGCTATGATGGGTGACAAGAAAGCACTACAAGCAGGAACCAGTCATAACCTTGGGCAAAACTTTTCCCGTGCCTTTGCGACACAGTTCACAGATGAAAATGGAGTTAGAGAACATGTTTGGCAGACATCATGGGCAATTAGTACCCGTTTTGTTGGAGGCATCATCATGACCCATGGAGATGATGCAGGCCTAATGCTACCCCCAAAGATTGCACCGATACAGGTGGTAATTGTTCCCATTTGGAAGAAGGATGAAGAAAAAGCTGCAGTTCTAAATGCAGCATTGACTGTAAAGGATGTACTTCTAAAATCAGGGATTAAGGTTAAACTTGATGACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGGCTAGTGGAAGCGTGGTAATATCAAGGAGAGATATCCCTGGGAAGCAAGGAAAAGTGTTTGGAATCTCTATGGAACCTTCGAATTTGGAGGCTTATGTTAAAGACAAGTTAGATGAGATACAGTCGTCCCTTTTGGAAAGAGCAATTGCATTTCGAGACAGGTTCTGTCCTTCAATTCTACTTTGGCTTGTGACTCCTATACATACTTGCACCATGAATTACTGGACTGACCAAACCAAGTCCCTGACTAGAACTTCATTAAGAACTGTCTCTAATGCTTTCGTGGTGACAAAAACTATTGCTACCAATTGGAATGAGGGTTTCCTGTATAATATCGTAGATGTAAGCACATACAATGATCTTAAAGCTGCAATATCTGAAGGGAAATGGGCAAGAGGCCCTTGGTCTGCTAGTGATGAGGACGAGTTAAAAGTGAAGGAAGAAACCGGAGCAACTATTAGGTGTTATCCTTTTGAACAGCCAAAAGGGATTAAAACATGCTTGATGACCGGTAATCCTGCTGAAGAAGTGGCTATTTTTGCTAAATCTTACTAA 1809 0.4505 MLSLRLTSFTHLLSPTSSAAIARRSRAILRRRNHLRKRPLAASFSAQSATAETQDRVNNSKNRVPEQVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEAEAIQMIDIYTRFAYEQAAIPVITGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFSRAFATQFTDENGVREHVWQTSWAISTRFVGGIIMTHGDDAGLMLPPKIAPIQVVIVPIWKKDEEKAAVLNAALTVKDVLLKSGIKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVASGSVVISRRDIPGKQGKVFGISMEPSNLEAYVKDKLDEIQSSLLERAIAFRDRFCPSILLWLVTPIHTCTMNYWTDQTKSLTRTSLRTVSNAFVVTKTIATNWNEGFLYNIVDVSTYNDLKAAISEGKWARGPWSASDEDELKVKEETGATIRCYPFEQPKGIKTCLMTGNPAEEVAIFAKSY 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02175 602 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 96 344 IPR006195 -
Vimu8g02175 602 PANTHER PROLYL-TRNA SYNTHETASE 42 472 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 SMART ProRS_C_1_2 536 602 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 Pfam Anticodon binding domain 351 453 IPR004154 -
Vimu8g02175 602 FunFam Proline--tRNA ligase, chloroplastic/mitochondrial 531 602 - -
Vimu8g02175 602 Pfam Prolyl-tRNA synthetase, C-terminal 536 602 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 Gene3D - 345 468 IPR036621 -
Vimu8g02175 602 Gene3D Bira Bifunctional Protein; Domain 2 70 344 IPR045864 -
Vimu8g02175 602 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 163 332 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu8g02175 602 NCBIfam proline--tRNA ligase 70 472 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 FunFam Proline--tRNA ligase, chloroplastic/mitochondrial 345 469 - -
Vimu8g02175 602 SUPERFAMILY Class II aaRS ABD-related 340 471 - -
Vimu8g02175 602 CDD ProRS_anticodon_zinc 340 602 - -
Vimu8g02175 602 CDD ProRS_core_arch_euk 75 334 IPR033721 -
Vimu8g02175 602 PRINTS Prolyl-tRNA synthetase signature 207 218 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 PRINTS Prolyl-tRNA synthetase signature 127 145 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 PRINTS Prolyl-tRNA synthetase signature 168 179 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 PRINTS Prolyl-tRNA synthetase signature 198 206 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 MobiDBLite consensus disorder prediction 43 60 - -
Vimu8g02175 602 MobiDBLite consensus disorder prediction 40 60 - -
Vimu8g02175 602 SUPERFAMILY Class II aaRS and biotin synthetases 75 338 IPR045864 -
Vimu8g02175 602 Hamap Proline--tRNA ligase [proS]. 69 602 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 FunFam Proline--tRNA ligase 64 344 - -
Vimu8g02175 602 SUPERFAMILY C-terminal domain of ProRS 530 602 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vimu8g02175 602 Gene3D - 531 602 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02175 Vimu-Chr8 28233993 28245387 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02175 K01881 - mnt:21397394 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02175 8 28233993 28245387 Vimu8g02175 8 28233993 28245387 ECH