Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02123 ATGTCTGGCGCTGCTATGGCAGTTGTGAAACCTGAGATGAAATCCTACATCTGGCTTCAAACTGTGGATGGCTCTATTCATCAAGTAGAGGAAGAGGAAGTACTTCAAACAGGCATGGGATCTTCCAAAACTTGTGCTATATCTCTTCCACATCATGTCAATCCTGCAATCTTGAATTTGATACTTGATTACTGTCGGTTTCACCAAGTACCAGGACATTCTAACAAGGAGCTCAAAATTTTCAACGAGAAGTTTGTACGGATAGATACAAAGAAGTTATGTGAGTTGACATCTGCTGCTGACAGCCTCCAACTGAAGCCTTTGGTTGACCTGACCAGTCGAGCCCTTGCTAGGATTATTGAAGGAAAAACTCCTGAGGAGATTCGTGAAACATTTCATTTGCCTGATGACCTGACTGAGGAAGAGAAGCTGGAGCCTCTGAGAAACGTAACTGATGATCCTCGCATTCGACTTCTAAACAGATTGTATGCTAGAAAGAGGAAAGAACTACAAGAGAGAAAGAAACTGAAGGATGTTGCGGTAGAGGAGGAACCAAAGGATGAGCGTTCAGTTGAAGATCTTCTATCATTTATTAATGGCGCAGATGGAGATGAACCATGGCAATCTTGTCTTATTTGCCTGCTGCTATTGTTTATTATTATTATTATTATTATTATTATTATTATCACTACTTTAAAATATCTAAAATTCATCTGA 717 0.3975 MSGAAMAVVKPEMKSYIWLQTVDGSIHQVEEEEVLQTGMGSSKTCAISLPHHVNPAILNLILDYCRFHQVPGHSNKELKIFNEKFVRIDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNVTDDPRIRLLNRLYARKRKELQERKKLKDVAVEEEPKDERSVEDLLSFINGADGDEPWQSCLICLLLLFIIIIIIIIIIITTLKYLKFI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02123 238 PANTHER SKP1 13 144 IPR016897 GO:0006511
Vimu8g02123 238 SMART skp1_3 14 105 IPR001232 GO:0006511
Vimu8g02123 238 SUPERFAMILY Skp1 dimerisation domain-like 79 147 IPR036296 GO:0006511
Vimu8g02123 238 Coils Coil 159 179 - -
Vimu8g02123 238 Gene3D Potassium Channel Kv1.1; Chain A 15 151 IPR011333 -
Vimu8g02123 238 Pfam Skp1 family, dimerisation domain 106 143 IPR016072 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02123 Vimu-Chr8 27548669 27551205 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02123 - - gmx:100808004 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02123 8 27548669 27551205 Vimu8g02123 8 27548669 27551205 ECH