Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02116 TTACTAATCAGAATGTTTATGTTGTTCACATTGTTAATTTGCATAAGCAGTAGGAAGGAATTAAGGGACAAGGAGAAAGCTGCATTACAGATGTTAGAGGGCTCAGTTCATTATTCCAACAGTATTAACCCATCACGTGTTGTCCAAATCTCTTGGCAACCAAGGGTCTTTCTATACAAAGGTTTTTTGTCTGATAAGGAGTGTGAGTACCTTATTTCTGTGGCATATGAAGAAAAATCCTTAGGGAATGGTGGAACTTCCTTGGTGATGGAAGATGATATTCTTGCAAGGATTGAAGAAAGACTTTCAGTTTGGACTTTCCTTCCTAAAGAGAACAGCAAGCCTTTGCAAGTTATGCAATATGGGTCGGAGCAGAATGATCGAACCTTAGATTATTTTACAAACAAAACCAATTTGGAATTGAGTGGACCTTTAATGGCAACAGTTGTTTTATATCTCTCAGACTCTACTAAAGGGGGTCAAATTCTCTTTCCGAAATCAGTGCCAAGGAGTAGCAGTTGGTCAAGTTGCAGTAACAGTAATAAGACCATACAACCAGTAAAAGGGAATGCAATTCTGTTTTTCTCTCTTCACCCAAGTGCTTCTCCTGACAAGAGTAGTCTTCATTCTAGATGCCCTGTGATTGAAGGGAACATGTGGTCTGCAATTAAATACTTCTATGCGAAACCAATTAGAAGAAGCAAGGTCTCAGCCATATCAGAAGACGATGAATGTACTGATCAAGATGAGAACTGTCCTGCATGGGCAGCTATGGGAGAATGTCAAAGAAATCCTGTCTTCATGGTTGGATCTCCTGATTATTATGGTACTTGTAGGAAAAGTTGTAATGCATGTCTTATCACAAGTTGA 870 0.3908 LLIRMFMLFTLLICISSRKELRDKEKAALQMLEGSVHYSNSINPSRVVQISWQPRVFLYKGFLSDKECEYLISVAYEEKSLGNGGTSLVMEDDILARIEERLSVWTFLPKENSKPLQVMQYGSEQNDRTLDYFTNKTNLELSGPLMATVVLYLSDSTKGGQILFPKSVPRSSSWSSCSNSNKTIQPVKGNAILFFSLHPSASPDKSSLHSRCPVIEGNMWSAIKYFYAKPIRRSKVSAISEDDECTDQDENCPAWAAMGECQRNPVFMVGSPDYYGTCRKSCNACLITS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02116 289 Pfam 2OG-Fe(II) oxygenase superfamily 117 227 IPR044862 -
Vimu8g02116 289 SMART ShkT_1 244 286 IPR003582 -
Vimu8g02116 289 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 40 225 IPR045054 -
Vimu8g02116 289 Gene3D q2cbj1_9rhob like domain 46 227 - -
Vimu8g02116 289 SMART p4hc 54 227 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vimu8g02116 289 FunFam Probable prolyl 4-hydroxylase 12 46 227 - -
Vimu8g02116 289 ProSiteProfiles ShKT domain profile. 245 285 IPR003582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02116 Vimu-Chr8 27462562 27464615 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02116 K00472 - gmx:100795761 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02116 8 27462562 27464615 Vimu8g02116 8 27462562 27464615 ECH