Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02115 ATGTCAATCCTGTGTGGCCTTCCTCTTCTTGAGTGTGTGTACTGTCTGGCTTGTGCTCGTTGGGCTTGGAAAAGATGTCTTCATTCTGCTGGCCATGACAGTGAGAATTGGGGCTTTGCCACAGTGGAAGAATTTGAGCCTATACCACGCCTTTGTCGCTATATTTTAGCTGTGTATGAAGAAGATCTTCGCCAACCCCTTTGGGCGCCTCCTGGTGGCTATGGAATTAGCCCTGATTTTTTACTTCTCAAAAAGACATATGAAGATACATGTGGAAGGGCACCACCCTATGTTCTGTATCTCGATCACGAGCATGAGGATATAGTTCTTGCCATCAGGGGTCTAAATTTGGCAAAGGAGAGTGATTATGCGGTTCTGTTGGACAATAGATTGGGGAAGAGAAAGTTTGATGGGGGGTATGTTCACAATGGGTTGTTGAAAGCTGCTGGTTGGGTTTTGGATGCAGAATGTGAAATTTTGAAGGATTTGGTGGAAAAGCATCCAAATTACACGCTGACTTTTGTTGGACATTCCCTTGGATCTGGTGTGGCAGCTATGCTGACAATGCTGGTGGTGCAGAATAGTCATAGACTGGGAAATATTGATCGGAAGAGGGTTAGGTGTTATGCCATTGCACCTGCTAGGTGCATGTCACTGAATTTGGCAGTCAGATATGCAGATGTCATCAATTCTGTTGACGACTTCTTACCAAGAACGGCCACCCCATTGGAAGATATATTCAAGTCTGTTTTCTGTTTGCCATGCCTACTGTGCATGAGGTGCATGAGGGATACATGCATTCCAGAAGAGAAGATGATCAAAGATCCAAGAAGACTCTATGCACCCGGTCGCCTTTATCACATTGTTGAGAGGAAACCTTTTAAAATGGGAAGGTTTCCCCCAGTAGTGAGGACAGCAGTGCCGGTAGATGGAAGGTTTGAGCATATAGTCCTTTCCTGTAATGCCACATCTGATCATGCCATCATTTGGATTGAGAAAGAAGCCCAAAGGGCTCTGGATTTGATGCTGGAGAAGGTTGAACCAATGGAAGCCCCTGCCAAGCAAAAAATGGAGCGTCAGGAAACCCTAACAAGACACAATGTTGAATATAAAGCAGCATTACATAGGGCCAAAACATTACATGTTCCACATGCTTACACACCACCATCAGAGTATGGCACTTTTGATGAAGATGGAGATGCCAGTTCAACAAGATCTCAGGGTGAGTCTTCTAATAAAAGTTCTGTGGATGAAAGCTGGGATGCATTGATTGAGCGTCATTTGGACAAGGATGAACATGGCCACACTGTGCTCAAGAAACAATGA 1326 0.448 MSILCGLPLLECVYCLACARWAWKRCLHSAGHDSENWGFATVEEFEPIPRLCRYILAVYEEDLRQPLWAPPGGYGISPDFLLLKKTYEDTCGRAPPYVLYLDHEHEDIVLAIRGLNLAKESDYAVLLDNRLGKRKFDGGYVHNGLLKAAGWVLDAECEILKDLVEKHPNYTLTFVGHSLGSGVAAMLTMLVVQNSHRLGNIDRKRVRCYAIAPARCMSLNLAVRYADVINSVDDFLPRTATPLEDIFKSVFCLPCLLCMRCMRDTCIPEEKMIKDPRRLYAPGRLYHIVERKPFKMGRFPPVVRTAVPVDGRFEHIVLSCNATSDHAIIWIEKEAQRALDLMLEKVEPMEAPAKQKMERQETLTRHNVEYKAALHRAKTLHVPHAYTPPSEYGTFDEDGDASSTRSQGESSNKSSVDESWDALIERHLDKDEHGHTVLKKQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02115 441 MobiDBLite consensus disorder prediction 397 418 - -
Vimu8g02115 441 MobiDBLite consensus disorder prediction 380 419 - -
Vimu8g02115 441 Pfam Lipase (class 3) 109 235 IPR002921 GO:0006629
Vimu8g02115 441 CDD Lipase_3 44 238 - -
Vimu8g02115 441 Pfam Lipase 3 N-terminal region 9 74 IPR005592 GO:0016042
Vimu8g02115 441 Gene3D alpha/beta hydrolase 40 247 IPR029058 -
Vimu8g02115 441 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 440 - -
Vimu8g02115 441 SUPERFAMILY alpha/beta-Hydrolases 41 268 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02115 Vimu-Chr8 27454143 27457821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02115 1 441 Miscellaneous Gene Families AT3G49050 70.402 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02115 - - var:108343710 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02115 8 27454143 27457821 Vimu8g02115 8 27454143 27457821 ECH