Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02113 ATGGGAACATCAGTGCAGGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCGTATTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAACGACCAATTCGACCCCTCACTCCTTCAACCCCTCTCCAGGGTAGCATCAACCATTGATGCTGTCTTGCTTTCACATGCTGATACACTTCACCTTGGTGCCCTCCCATATGCCATTAAGCAGCTCGGACTCTCTGCCCCGGTTTATTCAACTGAGCCTGTCTTCAGATTGGGCCTTCTCACTATGTATGACCAGTACCTTTCAAGAAAGGTGAAATTACACACTGGTTTTTTTGGTTTTGCTGTTGAGAAGCAGCAAGTGTCGGAATTCGATCTGTTCACATTGGATGATATTGATTCTGCTTTCCAGAGTGTAACGAGGCTAACATATTCTCAGAATCATCATCTGTCAGGCAAAGGAGAAGGAATTGTGATTGCGCCTCATGTTGCTGGACATCTTTTGGGAGGTACTGTTTGGAAAATTACAAAGGATGGTGAGGATGTCATATATGCTGTTGATTTCAATCATAGGAAAGAAAGGCATTTGAATGGAACTGCTCTTGGTTCTTTTGTGCGGCCTGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGTCAAAAGGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTAAGAGCAGGTGGCAATGTATTACTACCTGTTGACACTGCTGGACGAGTGTTGGAACTTATTCTGTTGTTGGAATCGTATTGGTCTGATGAAAACTTGAACTACCCTATATACTTTCTTACATATGTTGCTTCCAGCACAATTGATTACGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTTGAAAAAACTCGTGAAAATATTTTTCTTCTGAAGTATGTTACCCTTTTGATTAACAAGACTGACCTTGACAATGCTCCAGAGGGTCCAAAGGTGGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGCTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATTCAAAAAATCTTGTGCTTTTTACTGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTCCAAGCTGATCCACCACCAAAAGCTGTCAAAGTTGTTGTGTCCAAGCGTGTTCCTTTGGTTGGGGAAGAGCTTATTGCCTACGAAGAAGAACAAGATCGAATAAAAAAAGAAGCTTTAAAAGCCAGTCTTATAAAAGAGGAAGAATTGAAAACATCTCATGGGTCTGATAATAATAATAGTGATCCAATGGTCATTGATTCTGGCAATAATCATGTACCACCAGAAGTGGCTGGTCCACGAGGTGGAGGATACCGGGATATATTTATTGATGGATTTGTTCCCCCTTCCACGAGTGTTGCTCCAATGTTTCCCTGTTACGAGAATACATCAGAATGGGATGATTTTGGTGAAGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGAATCAGATTGCAATGCACGGAGGTGGTGATATAAATGGAAAACTTGATGAAGGTGCTGCAGGTTTAATACTTGATACAAAGCCATCAAAAGTTGTATCTGATGAAAGGACTGTGCAAGTTAAGTGTGTATTGGTTTACATGGATTTTGAAGGACGTTCAGATGGAAGATCCATTAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGGTCAGCAGAAGCTACAGAGCATCTGAAGCAGCACTGCCTGAAGCATGTTTGTCCTCACGTTTATGCTCCCCAAATTGATGAGACAATTGATGTGACCTCTGATTTATGTGCTTACAAGGTTCAACTATCTGAGAAGCTAATGAGCAATGTACTCTTCAAAAAGCTGGGAGATTATGAAGTAGCTTGGGTAGATGCTGTAGTAGGGAAGACAGAAAACGACATGCTTTCTCTGCTCCCTGTTTCTGAAGCGGCTCCGCCACATAAGTCTGTTCTTGTTGGTGATTTGAAATTGGCAGATATCAAACAGTTTCTCTCTGGCAAGGGTGTTCAGGTGGAATTTGCTGGTGGGGCTTTACGTTGTGGTGAATACGTAACTCTTCGGAAAGTTGGGGATGCAACTCAGAAGGTAAGTGCTCCTTCTGAGCATTTGTTACTTTTCTGTAATCTTAGAAAACTGGGTGGTGGTTCTGGTGCTCAGCAAATTGTTATTGAAGGTCCTCTGTGTGAAGATTACTATAAAATTCGTGACTATCTCTATTCACAATTTTATTTGCTTTAG 2316 0.4171 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDQFDPSLLQPLSRVASTIDAVLLSHADTLHLGALPYAIKQLGLSAPVYSTEPVFRLGLLTMYDQYLSRKVKLHTGFFGFAVEKQQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRVLELILLLESYWSDENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFLLKYVTLLINKTDLDNAPEGPKVVLASMASLEAGFSHDIFVEWANDSKNLVLFTERGQFATLARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQDRIKKEALKASLIKEEELKTSHGSDNNNSDPMVIDSGNNHVPPEVAGPRGGGYRDIFIDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMNQIAMHGGGDINGKLDEGAAGLILDTKPSKVVSDERTVQVKCVLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIDETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAVVGKTENDMLSLLPVSEAAPPHKSVLVGDLKLADIKQFLSGKGVQVEFAGGALRCGEYVTLRKVGDATQKVSAPSEHLLLFCNLRKLGGGSGAQQIVIEGPLCEDYYKIRDYLYSQFYLL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02113 771 Gene3D - 7 272 IPR036866 -
Vimu8g02113 771 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 770 IPR027075 GO:0005847|GO:0006378|GO:0006379
Vimu8g02113 771 MobiDBLite consensus disorder prediction 429 455 - -
Vimu8g02113 771 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 270 - -
Vimu8g02113 771 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 548 599 IPR011108 -
Vimu8g02113 771 Pfam Cleavage and polyadenylation factor 2 C-terminal 658 768 IPR025069 -
Vimu8g02113 771 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 617 IPR036866 -
Vimu8g02113 771 Pfam Beta-Casp domain 257 380 IPR022712 -
Vimu8g02113 771 SMART Beta_Casp_2 257 380 IPR022712 -
Vimu8g02113 771 CDD CPSF2-like_MBL-fold 8 218 IPR035639 -
Vimu8g02113 771 Pfam Metallo-beta-lactamase superfamily domain 22 204 IPR001279 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02113 K14402 - gmx:100777002 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02113 8 27404109 27415323 Vimu8g02113 8 27404109 27415323 ECH