Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01996 ATGCGAGGCTTTGCTTTCTTCAAGCGCAATCTCGATAATTTCCCTTATAACCCGAATTTCAATTTCTTCAGAGAATTCGCGCAATCCACCGCAATTCCCAAAAAGCAACTTAGGGTTCGTGACCACGGCTATGACAACTACATGGAAGTGGAGAAGAAAACGCGCAAGGTCCTCAAGTTTCAGAGCATCATCCTCCCCGAGCCCACGCAATCGCTCCCAATCTCGCGTCTCGAAAACCTCGCGCGCCGCTTTGGTTTCACGCGCTATGAGGCTGGTGCGTTCGTCCTCAAGTTCCCGCACGTCTTCGAAATCTTTGAGCATCCAGTCCAGCGCATTCTCTTCTGCCGCCTCACCCGCAAAGCCATCCTCCAGATTCAGCAGGAGCGGCAGGCGCTCGCGGAACAGATTCCACGCGCCGTCACGCGGCTTCGGAAGCTTCTGCTGATGACGAACGAAGGCAGGCTCCGCCTTGAGCATGTGCGCATCGCACGCTCCGCCTTCGGGCTTCCCGACGACTTCGAAAACTCTGTGGTTCTGAGGTACCCTAAGTTTTTCCGTTTGATTGATGCAAAGGAAACTAGGATGAAGTACATTGAGGTTGTGGAGAGGGACCCTAGGTTATCAACTTGTGCGATTGAGGAGGTTAGGGAGAGGGAGTATAGAGAGAGAGGTGGTGATGCTGAGGATGTTAGATTTTCTTTTATCATTGATTTTCCACCTGGTTTTAAGATAGGTAAGTATTTTAGGATTGCAATGTGGAAGTGGCAGAGGCTTCCTTATTGGTCCCCGTATGAGGATGTTTCTGGGTATGATTTGAGGTCCATTGAGGCCCAGAAGAGGATGGAGAAGAGAGCTGTGGCCACCATTCATGAGTTGTTGTCGTTGACTGTGGAGAAGAAAATTACATTGGAGCGGATCGCACATTTCCGGATGGCGATGAACCTGCCCAAGAGGTTGAAGGATTTCCTGCTCCAGCACCAAGGTATTTTCTATGTCTCCACCAGGGGGAATCAGGGGAAGCTTCACACTGTTTTCCTTAGGGAGGCGTATAGAAAAGGCGAGCTGATTGAGCCGAATGAGTTGTATTTGGCACGGAGGAAGCTAGCTGAGCTTGTGCTGTTGAGTCCAAGGAAAGCCAAGGTTGATAAGGAGTTGGTTGGGTACAGGAGAAGCAGGTTAGAGGACGAAATGGGGCAGGTGACGAGGACATATGTGGAGGATGCTTGTGAAGACTTTAAGGGGGAAGATGGTGTGGTGCTGGATAAAGATGCAGAGGATGATTTGACGTCAGATATAGGTTCTGATGTTGATTTGGGAGATGAGGGTGATGATTTTGTGGATAGTGCATAA 1350 0.4993 MRGFAFFKRNLDNFPYNPNFNFFREFAQSTAIPKKQLRVRDHGYDNYMEVEKKTRKVLKFQSIILPEPTQSLPISRLENLARRFGFTRYEAGAFVLKFPHVFEIFEHPVQRILFCRLTRKAILQIQQERQALAEQIPRAVTRLRKLLLMTNEGRLRLEHVRIARSAFGLPDDFENSVVLRYPKFFRLIDAKETRMKYIEVVERDPRLSTCAIEEVREREYRERGGDAEDVRFSFIIDFPPGFKIGKYFRIAMWKWQRLPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKRLKDFLLQHQGIFYVSTRGNQGKLHTVFLREAYRKGELIEPNELYLARRKLAELVLLSPRKAKVDKELVGYRRSRLEDEMGQVTRTYVEDACEDFKGEDGVVLDKDAEDDLTSDIGSDVDLGDEGDDFVDSA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01996 449 MobiDBLite consensus disorder prediction 425 449 - -
Vimu8g01996 449 MobiDBLite consensus disorder prediction 430 449 - -
Vimu8g01996 449 Pfam Plant organelle RNA recognition domain 39 375 IPR021099 GO:0003723
Vimu8g01996 449 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 27 394 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01996 Vimu-Chr8 25849112 25857657 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01996 - - gmx:100782167 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01996 8 25849112 25857657 Vimu8g01996 8 25849112 25857657 ECH