Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01972 ATGATGAGGATGAGGAATAGTAGTGGTGGTAACAATCACAAGACAAATGGTCTTTCTTCCATCATGAATGCAGGAGGCTCAGCTGCTTGTAGATCTGAGCCCGGTTCAAAGGAATGGGAGATGAGACCAGGTGGAATGCTGGTTCAGATGAGAACCGCTGATTCGGATCGGAACCCAGTTCTTGTTCCCACAATTAGAGTTAGGGTCAAGTATGGTTCAATTTACCATGAAGTCAACATTAGTTCTCAAGCTACATTTGGGGAGTTGAAGAAGATGTTGTCAGGACCAACTGGGTTGCACCATGAAGACCAAAAGCTGTTTTACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGACATGGTTGGGGTGAAGGATAAATCCAAGATAGTGCTAGTTGAAGACCCTATTAGTCAAGAGAAGAGGTTGTTAGAGATAAGGAAGAATGCTAAGATGGAGAAAGCTGCAAAATCCATCTCAGCAATCAGCTTGGAAGTAGACAGGCTTGCAGGGAGGGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACAGATGTTCTGAATCTGATTGAGTTGTTGATGAATCAATTGCTTAAATTGGACGGTATAATGGCTGATGGGGATGTGAAATTACAGAGGAAAATGCAGGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTTGATCTGCTGAAGGTTAAGAATTCTGTGCCTAGCAGCAATGGAGACCATGGTGCAGTGCAGCCTCAACAACATAAGCATTCAAATGGGCAGAGGCTGGGAGCTGTTCAAGAGAAACAACAAAAGCATTCAAATGGACATAATAGGTTAGCCTTAGCACCAATTCAAGAGCAGCAACAAGAACAACCTAGGAACTCAAATGAGAAATCTCTAGCACTTTACCAAGAACAACAACAACAACACCACCAAACCTCAAGGAATTCGACCTCAGAAGTTGTAGTTACCACAAACTGGGAGTTGTTTGATTCTGCCCCACCATTAATCCCTGTGCAGTCCACATCCCCACCACAACAACCCCCCTCAGTGACTCATAATTCAGGTCCTCCAAAGTTCAATTGGGAATTCTTCAACTGA 1107 0.43 MMRMRNSSGGNNHKTNGLSSIMNAGGSAACRSEPGSKEWEMRPGGMLVQMRTADSDRNPVLVPTIRVRVKYGSIYHEVNISSQATFGELKKMLSGPTGLHHEDQKLFYKDKERDSKAFLDMVGVKDKSKIVLVEDPISQEKRLLEIRKNAKMEKAAKSISAISLEVDRLAGRVSAFESIISKGGKVVETDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVKRVQKYVETLDLLKVKNSVPSSNGDHGAVQPQQHKHSNGQRLGAVQEKQQKHSNGHNRLALAPIQEQQQEQPRNSNEKSLALYQEQQQQHHQTSRNSTSEVVVTTNWELFDSAPPLIPVQSTSPPQQPPSVTHNSGPPKFNWEFFN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01972 368 ProSiteProfiles Ubiquitin domain profile. 63 133 IPR000626 GO:0005515
Vimu8g01972 368 Pfam BAG domain 159 234 IPR003103 GO:0051087
Vimu8g01972 368 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Vimu8g01972 368 Pfam Ubiquitin family 75 133 IPR000626 GO:0005515
Vimu8g01972 368 Gene3D - 64 134 - -
Vimu8g01972 368 ProSiteProfiles BAG domain profile. 158 236 IPR003103 GO:0051087
Vimu8g01972 368 MobiDBLite consensus disorder prediction 1 26 - -
Vimu8g01972 368 FunFam BAG family molecular chaperone regulator 1 133 240 - -
Vimu8g01972 368 CDD Ubl_AtBAG1_like 64 133 - -
Vimu8g01972 368 Gene3D BAG domain 135 240 IPR036533 GO:0051087
Vimu8g01972 368 MobiDBLite consensus disorder prediction 239 272 - -
Vimu8g01972 368 MobiDBLite consensus disorder prediction 282 322 - -
Vimu8g01972 368 SMART BAG_1 158 236 IPR003103 GO:0051087
Vimu8g01972 368 FunFam BAG family molecular chaperone regulator 1 63 134 - -
Vimu8g01972 368 SUPERFAMILY BAG domain 118 240 IPR036533 GO:0051087
Vimu8g01972 368 MobiDBLite consensus disorder prediction 239 322 - -
Vimu8g01972 368 SUPERFAMILY Ubiquitin-like 54 139 IPR029071 -
Vimu8g01972 368 MobiDBLite consensus disorder prediction 336 368 - -
Vimu8g01972 368 PANTHER BCL2-ASSOCIATED ATHANOGENE 22 333 IPR039773 GO:0051087
Vimu8g01972 368 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01972 Vimu-Chr8 25552610 25556161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01972 - - vun:114181975 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01972 8 25552610 25556161 Vimu8g01972 8 25552610 25556161 ECH