Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01970 ATGTGTCATCCAGCTCTTGACGTCAACTGCAAATGCTGCACCACTTCATCTTCTGATTACCAAATTTCAATCAAGGACTCAGAAGAGAAGCACCCCAGAATGCTTGCCAACCCTTTGATCTCTAAACTCCCAAACAACATAACCACAACAACAGAAAAAACAACACCACAACCGATAAAAGTTGTCACAAAAACAACAAAGTCTCATGTCCCTGACACCATCAGTGAAGTCATTTCCATATCCAAAATAGCCATCCCTATGATCCTCACTGGCCTCCTCCTCTACTGCCGCTCCATGATCTCCATGCTCTTCCTTGGCCACCTTGGAGAGCTTGCTTTGGCCGGTGGCTCACTTGCTGTTGGCTTTGCCAACATCACTGGCTACTCAATCTTGTCTGGTCTTGCTGTCGGAATGGAGCCAATCTGTGGTCAAGCTTTTGGTGCCAAGAGGTTCACCCTACTTGGCCTCTGCTTGCAAAGAACCGTTCTTCTTCTCCTCTTCACTTCCCTCCCCATATCACTCCTTTGGCTCCACATGAAGAAAATTCTTCTCCTTTGTGGCCAGGATGAGTCCATAGCCACACAGGCTCAATCCTATCTTGTTTACTCCATTCCTGACCTCATAGCACAATCTTTCTTGCATCCTATGAGAATTTACCTCAGGAGTCAATCCATTACCCTCCCTCTCACCCTCTGTGCCTCCCTGTCAATCCTTCTTCACATACCCATCAACTACTTCCTTGTGTCACACCTCGGGTTGGGAATCAAAGGGGTGGCTCTTGGTGGGGTGTGGACAAACTTCAACCTCGTGGCTTCTTTGATTCTTTATATAGTCTTCTCTGGCACTTACAAGAAAACATGGGGTGGTTTCTCTTTTGAGTGCTTCACACAGTGGAGGTCTCTTCTCAATTTGGCCATTCCAAGCTGTGTTTCGGTGTGCTTGGAGTGGTGGTGGTATGAGATCATGATTCTGTTATGTGGGCTGTTGGTGAACCCCAGAGCAACCGTGGCTTCAATGGGAATTCTGATCCAAACCACTTCTTTGCTTTACATTTTCCCTTCTTCATTGAGCTTCAGTGTTTCAACAAGAGTTGGCAACAAGCTTGGCGCACAGAAGCCCTCAAAGGCAAGGCTTTCTGCCATTGTGGGGTTGTCTTGCAGCTTCGTGTCAGGTGTCCTGGCATTGGTTTTTGCTCTCATGGTTAGGAACACATGGGCTAGCATGTTCACAAAGGACAAGGAGATCATAAGTCTGACATCTATGGTGTTACCCATAATAGGCCTTTGTGAGCTTGGGAATTGCCCTCAAACAACAGGGTGTGGGGTGCTGAGAGGCACAGCAAGGCCTAAAATCGGTGCCAACATCAACCTGGGATGTTTCTACCTTGTGGGAATGCCTGTGTCCATTTGGCTAGCTTTCTTCACTGGCTATGACTTTCAAGGCCTCTGGCTTGGCCTTCTTGCAGCTCAAGGGTCTTGTGCAGTGACCATGTTGGTGGTTCTGTGCAGAACTGATTGGGAATCTGAGGCCCAAAGAGCCAAGAAACTCACAGGAATGGGTGGAGCTTGTGGTGTTGATGATCACAACCGTGAGGTTGATCCAGAGAAGCCACTCAAATTTGAAAGCAAGGAAGATTCTTTGGCATTATTAGCTGACTCAGATGAAAATGAACAGTGA 1677 0.4735 MCHPALDVNCKCCTTSSSDYQISIKDSEEKHPRMLANPLISKLPNNITTTTEKTTPQPIKVVTKTTKSHVPDTISEVISISKIAIPMILTGLLLYCRSMISMLFLGHLGELALAGGSLAVGFANITGYSILSGLAVGMEPICGQAFGAKRFTLLGLCLQRTVLLLLFTSLPISLLWLHMKKILLLCGQDESIATQAQSYLVYSIPDLIAQSFLHPMRIYLRSQSITLPLTLCASLSILLHIPINYFLVSHLGLGIKGVALGGVWTNFNLVASLILYIVFSGTYKKTWGGFSFECFTQWRSLLNLAIPSCVSVCLEWWWYEIMILLCGLLVNPRATVASMGILIQTTSLLYIFPSSLSFSVSTRVGNKLGAQKPSKARLSAIVGLSCSFVSGVLALVFALMVRNTWASMFTKDKEIISLTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKIGANINLGCFYLVGMPVSIWLAFFTGYDFQGLWLGLLAAQGSCAVTMLVVLCRTDWESEAQRAKKLTGMGGACGVDDHNREVDPEKPLKFESKEDSLALLADSDENEQ 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01970 558 CDD MATE_eukaryotic 76 512 IPR045069 GO:0042910|GO:1990961
Vimu8g01970 558 Pfam MatE 307 469 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu8g01970 558 Pfam MatE 86 246 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu8g01970 558 NCBIfam MATE family efflux transporter 86 483 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu8g01970 558 PANTHER MULTIDRUG RESISTANCE PROTEIN 73 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01970 Vimu-Chr8 25507239 25509729 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01970 K03327 - gmx:100787316 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01970 8 25507239 25509729 Vimu8g01970 8 25507239 25509729 ECH